Rickettsia slovaca D-CWPP: MC3_06170
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Entry
MC3_06170 CDS
T01801
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsw
Rickettsia slovaca D-CWPP
Pathway
rsw03030
DNA replication
rsw03410
Base excision repair
rsw03420
Nucleotide excision repair
rsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MC3_06170 (ligA)
03410 Base excision repair
MC3_06170 (ligA)
03420 Nucleotide excision repair
MC3_06170 (ligA)
03430 Mismatch repair
MC3_06170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsw03032
]
MC3_06170 (ligA)
03400 DNA repair and recombination proteins [BR:
rsw03400
]
MC3_06170 (ligA)
Enzymes [BR:
rsw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MC3_06170 (ligA)
DNA replication proteins [BR:
rsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MC3_06170 (ligA)
DNA repair and recombination proteins [BR:
rsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MC3_06170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MC3_06170 (ligA)
MMR (mismatch excision repair)
DNA ligase
MC3_06170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MC3_06170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
AFD20105
UniProt:
H8LPQ9
LinkDB
All DBs
Position
complement(1031146..1033215)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIFC
EPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL
HYTPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaattgcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagtgcccatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaattttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaacacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatccgcgtaatgctgctgccggatcacttcgtcagcttgattcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctc
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggtggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatttgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagaaacgtttgatactcctttattttgtctgtcatgcaattctaagttg
cattatacgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagtc
gtatttaccggtagtttaccgacgatatctagagcagaagctaaagcaacggctgagaag
cttggggctaaagttgcagttggcgtatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa
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