KEGG   Rhizoctonia solani: RhiXN_01557
Entry
RhiXN_01557       CDS       T09256                                 
Name
(RefSeq) LSM domain-containing protein
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
rsx  Rhizoctonia solani
Pathway
rsx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    RhiXN_01557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_01557
   03041 Spliceosome [BR:rsx03041]
    RhiXN_01557
   03032 DNA replication proteins [BR:rsx03032]
    RhiXN_01557
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     RhiXN_01557
Spliceosome [BR:rsx03041]
 Complex A
  U1 snRNP components
   Sm proteins
    RhiXN_01557
  U2 snRNP components
    RhiXN_01557
 Complex B
  U1 snRNP components
    RhiXN_01557
  U4/U6.U5 tri-snRNP components
    RhiXN_01557
 Complex C
  U2 snRNP components
    RhiXN_01557
DNA replication proteins [BR:rsx03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     RhiXN_01557
SSDB
Motif
Pfam: LSM Beta-barrel_CAF17_C BSH_Fcp1
Other DBs
NCBI-GeneID: 67023839
NCBI-ProteinID: XP_043187199
UniProt: A0A8H8P9U4
LinkDB
Position
16:complement(join(1016632..1016650,1016709..1016766,1016834..1016926,1016975..1017035,1017091..1017384,1017440..1017442))
AA seq 175 aa
MPPSKSKGGKMLSLVNWRLKITLNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQ
GGVEQELKRTLGLIILRGVVSISVEGPPPAGDEDKNKSTLPAGPGRGMPAGRGIGMMPPG
GMPPPAMAGRPMPFGAPPPGMPPGMPGFGRGFPPGMPFPPPGFQGGPPPGFQPPQ
NT seq 528 nt   +upstreamnt  +downstreamnt
atgcctccaagcaaaagtaaaggcggcaaaatgctgtcgctcgtaaactggaggctcaaa
atcacattgaacgatggccgtgccctcactggacagatgcttgcatttgacaagcatatg
aacctcgttcttgcggattgcgaagagttccggcgcgtcaagtccaaaaagtcggaccag
ggcggcgttgagcaggaattgaagcggacccttgggttgattattcttcgaggagttgtc
agtatcagtgtcgaaggaccaccacctgctggagatgaggacaagaacaagagcacgctg
cctgctggacctggacgcggtatgcccgctggtcgcggaattggaatgatgccaccaggt
ggcatgccccctccagccatggccggccgtcccatgccttttggcgcacctccccctggt
atgccgcctggtatgcctggctttggacgaggcttccctcccggtatgccattccctcca
cccggattccaaggtggcccgccgccaggcttccagcctcctcagtaa

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