Ralstonia solanacearum UY031: RSUY_18350
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Entry
RSUY_18350 CDS
T06155
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsy
Ralstonia solanacearum UY031
Pathway
rsy03030
DNA replication
rsy03410
Base excision repair
rsy03420
Nucleotide excision repair
rsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSUY_18350 (ligA)
03410 Base excision repair
RSUY_18350 (ligA)
03420 Nucleotide excision repair
RSUY_18350 (ligA)
03430 Mismatch repair
RSUY_18350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsy03032
]
RSUY_18350 (ligA)
03400 DNA repair and recombination proteins [BR:
rsy03400
]
RSUY_18350 (ligA)
Enzymes [BR:
rsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSUY_18350 (ligA)
DNA replication proteins [BR:
rsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSUY_18350 (ligA)
DNA repair and recombination proteins [BR:
rsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSUY_18350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSUY_18350 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSUY_18350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSUY_18350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ALF88175
LinkDB
All DBs
Position
1964975..1967416
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTEHPAPGATPEARAASLRAALNRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPE
LRTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDP
PIEYAAELKFDGLAINLRYEQGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAV
PDVLEVRGEVYMRRDDFERLNARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEAAGWSGMPETHSGMLDALVALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFD
IDGVVYKVNALALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
APVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGS
DLFNPAQQPKYPPFELPKSCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATK
WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPD
VGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAKLRSQLEPAELYAVLGVPKL
TATRSKQLATLVPTLAQLTTADAAQLEGLPAEVSASLLDWLEADGHRARLAQLDALRAEL
LAAMPAETAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEE
AGSKLAKAEELGVKVLDEAGMLALLQNPPGDSA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaccgaacaccccgcgcccggcgcaacacccgaggcgcgggcagcctcgctg
cgcgcggcgctgaaccgctacgcccacgagtactacgtgctggaccagcccagcgtgccg
gacgccgaatacgaccggctctatcgcgcactggaagcgctggaagccgaacaccccgaa
ctgcgcacgccggattcgcccacgctgcgggtgggcggcgccgtcctgccggagttcgcc
ccggtgcggcacgtggtgccgatgctgtcgatccgcaccgagaccgacaccaccgccgac
ggcgcgctcgccttcgatgccagcgtgcgccgcgagctggggctggccgaatccgatccg
cccatcgaatacgcggccgaactcaagttcgacggcctggcgatcaacctgcgctacgaa
cagggtttcctggtccaggccgccacgcgcggcgacggtgccaccggcgaagacgtcacg
cagaatatccgcaccatccgccagatcccgctcggcttgcggcccgtcgacggtgccgtg
cccgacgtgctcgaagtgcgcggcgaggtctacatgcggcgcgacgatttcgagcgcctc
aacgcccgccagcgcgaacgcggcgagaagaccttcgtcaacccgcgcaacaccgccgcc
ggcgcagtgcgccagctcgatccgaagatggccgccgagcgcccgctgtcgttcttcgcc
tatggcctgggcgaggcggccggctggagcgggatgcccgagacgcattccggcatgctc
gacgcattggtcgccctcggctttccggtcagcaaggagcgtgcagcggtgatgggcggc
gaagggctggtgcaatttcacgccgccatcggcgccaagcgcgacagcctgccgttcgat
atcgacggcgtggtctacaaggtcaatgcgctggcgctgcagcgcgagctgggcttccgc
acgcgcgagccgcgctgggcggtggcgcacaagtatccggcgcaggaggcgctgaccacc
gtcgagtcgatcggcgtgcaggtcgggcgcaccggcgccatcacgccggtggcgcggctg
gcgccggtgtttgtcggcggcgtgacggtcaccaacgccacgctgcacaacgaagacgaa
gtccgccgcaaggacgtgcgcgtgggtgacaccgtgatcgtgcgccgtgccggtgacgtg
atccccgaagtcgtggccgtggtgctcgagcgccgcccgatggaagacgtgccgggcagc
gacctgttcaaccccgcgcaacagcccaaatatccgccgttcgaactgcccaagagctgc
ccggtctgcggctcgcacgtggtgcgggaagagggcgaggcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggcgatccgccatttcgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctggaatacgtg
cacggcatcgccgacctgtaccggctcacgctggacgctttcctggaaatgaagcgccgc
gccgacgagcgcgacggcgtgacgcccgagaccgtggccgccggcaagatcgccaccaaa
tgggccgagaacctgctggccggcatccaggccagcaagacgccgccgctggcgcgcttc
ctgttcgcgctgggcatccgccatgtcggcgaatcgaccgccaagacgctggccgattgg
ctgggcagcctggcggtgatccgccgcgcgccggcaccgctgctgttgaccttgcccgac
gtgggggcgacggtcgccgaggccatcgccgatttcttcgacgagccgaaaaaccagcag
gcgctcgatgcgctgcttgccgccggcgtggccccgcagggcgagcatccgcccagcgca
aagctgcgcagccagctggagcccgccgaactgtacgccgtgcttggcgtgcccaagctg
acggccacccgcagcaagcaactggcgacgctggtgccgacgctcgcgcagttgaccacc
gccgatgccgcgcagttggaggggttgcccgccgaggtgtcggcgtcgctgctggactgg
ctcgaggccgacggccatcgcgcccggctggcgcagctggacgcgctgcgcgccgagctg
ctcgccgccatgccggccgaaaccgccgaggaaggcgcgctgagtggcaagaccgtggtg
ctgaccggcacgctgcccaacctgacccgcgacgcggccaaggccatgctggaggcggcc
ggcgccaaggtgtccggctcggtgtcgaagaagaccgactacgtggtggccggcgaagag
gcgggcagcaagctcgcgaaggccgaggagctgggcgtgaaggttctggacgaagcgggt
atgctcgcgctgttgcagaacccgccgggagattccgcgtga
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