Raphanus sativus (radish): 108815296
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Entry
108815296 CDS
T06014
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108815296
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108815296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108815296
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108815296
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
108815296
NCBI-ProteinID:
XP_018443444
UniProt:
A0A6J0K8Z8
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Position
1:complement(2703164..2706282)
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AA seq
537 aa
AA seq
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MLRGSHFISSPPTSISPVSSNPLFSQDQLTMPLFELFRLTNTKFESAQDNNPSPPVDEVV
ELVWENGQISTQTQSNRSRNIPPPPPPGQESSSRAREIVNGSKTTMVEEIPMSVPSLMTG
LSQDDDLVPWLNPHHQSLDGYCSDFLHDVSPVAVDEQESEDAFPLFQRRDNGNESAPPAD
STSLQFNGFQSHSLYGSGRARDPPVSQPAKPDPSTSNKPGLINFSHFLRTAASAKTNDSP
PGSKEKSPQCPPNVFQTRVLGAKEVLNESVMPKDNQKACLVSEDSNRKDQESEKAVVCSS
VGSGNSPSESPLKRKHPPDVQDIECHSEDVEGESGDGRKEAAPSRTGMGSKRSRSAEVHN
LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQFMSMASGYYMPP
VMFPPGMGHHYQAAAMAMGMGMPYAMGLPDINRGGPSVNNAPQFQFPGMQQPVTMALPRV
SAGGLFGSSTVEMNKSGDGSTRDLPGTNDQTTTKSNNGLKPIKRKQASPPDQFCGSS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgaggatctcactttatatcttccccaccgacttcgatttctccagtttccagt
aatcctctgttttctcaggatcaactcaccatgcctctgtttgagcttttcaggctcacc
aatacaaaatttgaatctgctcaagacaataacccttccccacctgtggatgaagttgtt
gagctggtttgggaaaacggtcagatttcaactcaaacccagtcaaacagatcgaggaac
attccaccaccaccaccaccaggacaagaaagctcttcgagagctagagagattgtaaac
ggctcaaagacaacgatggtggaggagatcccaatgtcagtgccctcactaatgacgggt
ttgagtcaagacgatgacttggttccgtggctgaatcctcatcatcaatccctagatgga
tactgctctgatttcttgcatgatgtttctcctgttgctgtcgatgagcaagagagcgaa
gatgctttcccgttgtttcagaggagagacaatggcaatgaatcagctccccctgctgat
tctacttcattacagttcaacggtttccaatcacattctctgtatggaagcggtagagct
agagatcctcctgttagccaaccagcaaaaccggatccatcaactagtaacaagcctggt
ttgatcaacttctcgcatttcttacgcactgcagcttcggctaagaccaatgattctcct
cctggctctaaagagaagagccctcaatgcccgccgaatgtgtttcagaccagagttctt
ggagctaaagaggttctcaacgagtctgttatgcctaaggataaccaaaaggcttgccta
gtttcggaagactcgaacagaaaagaccaagagagtgaaaaggccgttgtatgttcttct
gttggctcgggtaatagtccatctgaaagtcctttaaaaagaaagcatcctcctgatgtt
caagacattgagtgtcatagtgaagatgttgaaggagaatcaggagatggaagaaaagaa
gcagctccatctcgaaccggcatgggttcaaagagaagccgctcggctgaagtacataat
ctgtctgaaaggagacggcgtgataggattaacgagaagatgcgtgctcttcaagaactc
ataccaaactgcaacaaggtggataaagcttcgatgctagatgaagcaatcgagtatctc
aagtcacttcaacttcaagtacagttcatgtcaatggcgtctggttactacatgccaccg
gttatgttcccaccgggtatggggcatcattaccaggcagcagcaatggcaatgggtatg
ggaatgccttatgcaatgggcttgccagatatcaaccgtggcggtccctccgttaacaac
gcaccacagttccagttccccgggatgcaacaacctgtgaccatggcgcttccacgtgtc
tctgctggtggtctcttcggttcttcaacggtggagatgaataagagtggtgatggttcg
actagagatctaccaggtactaacgatcaaacgacgacaaagagtaacaatggcctgaaa
ccaattaagagaaaacaagcgtctcctcctgatcagttttgtggatcgtcgtaa
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