Raphanus sativus (radish): 108817408
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Entry
108817408 CDS
T06014
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108817408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108817408
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108817408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Ig_NUP210_2nd
Big_2
Ig_NUP210_5th
Ig_NUP210_15th
Ig_NUP210_16th
Ig_NUP210_3rd
HL_N-beta
Ig_NUP210_8th
Ig_NUP210_9th
Motif
Other DBs
NCBI-GeneID:
108817408
NCBI-ProteinID:
XP_018445583
UniProt:
A0A6J0KDF8
LinkDB
All DBs
Position
7:complement(20056272..20066756)
Genome browser
AA seq
1929 aa
AA seq
DB search
MVRLSSCFFVVVLVLLSIRETFSELGSGPHITDVNILLPPRMKNPVEYRLQGSGGCFKWS
WDHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDTQTGMVIRCKVFIDNFS
RIQIFHNSIKLDLDGLSMLRVRAFDNQENEFSSLVGLQFMWKLMPESGGTTHHLAHVPLK
ESPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADEIVL
TVAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVHLPSSHHRWSALNSSVVQVDSLI
GLTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDAFILYISPWSTSVDPTTELKSFPSS
MHWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGQETDYWKIVSVPDDLSSEYGW
RNSKILKAISPGLGEVTATLTYFNGHQNSKEVLKVVQDIMVCEKVQFTLNSEDDTPKILL
PWTPAVYQEMELLVTGGCAKASSDYKWFTSDMSILSVSAYGIIQAKRPGIATVKVVSTFD
SQNFDEVIVEVSIPSSMVMLQYFPVETVVGSHLQAAVTMKALNGASFSRCDAFNSLIKWK
TGSDSFVIVNATSEMMMLEELRSTGSSPPCSRAYLYTSSPGRTVLQATLAKEFHYFDKSL
SESIDLKATSSIGAYQPLTIRQDSDGNHHGGYWFDKTQEETDVGVSNIYLVPGTYVDVTL
LGGPERWDDNVEFTETVTKVNEDKEDLTNGDNIYHNFDGHVNMFRVSCQTLGSYKLVFQR
GNLVGVDHPLPAVAEAFLFVQCSLPSSVVLIVDEPVNKLDVIRAASLADRAPGRLRVTPV
TVANGQIIRVAAVGISDSGEAFSNSSTLSLRWELSSCDNLASWDDDYNLKMTKTSWERFL
ALHNESGLCTVRATVSGIDHSGKPQYSSLLPEVSKSTLTDAVRLQLVSTLRVTPEFNLVF
LNPNAKVNLSMTGGSCLWEAVVNDPHVAEVVKPPSGLQCSQMTLSPKGLGTTLVTVYDIG
VSPPLSALAVIKVADIDWIKIASGDEISIMEGSTHSFDLLTGINDGITFDSSQYPLMDIM
VHIEDDLAEHVSVDDNPLSVGEHVATSSFKVAARRLGITTLYVSARRQSGDKVVSQTIKV
EVYAPPRLHPQGIFLVPGASYMFTVEGGPTMNVSLYYTTVDKQVAKIEKSGRLYATSPGN
TTIYATIYGSEGTVVCEAVGNAEVGLPATATLISQSDTVAVGREMPIFPSFSQGDLLSFY
ELCRAYRWTIEDEKVLSFHVPSIVAEENAGFFNVVQGRSAGKTRVTIAFSCDFVSPGLYS
ESRTYEASIVLSVVPDLPLSLGVPMTWVLPPLYTSSSLLPSSPETPKHKDGQSHRGNVVY
SLLKDCSSRADVERDTISIDGGSIKTTEINNVACIQAKDRTSGRIEIAACVRVAEVAQIR
MKSEVIPFHHVDLAVGGELELPINYYDTLGIGFLEAHGVTTYNVETNHRDVVSIKTVNDQ
TSVYIKGIKHGKALIRVSIGGNPRKADYVLVSVGAHIHPQKPVIHTGNMLNFSVTGADRQ
VSGQWVSSNRSILSVNAVSGQAKAIGQGSAHVIFEGHDLKLQTKVTVLLGNTIYVDSPRE
TLTNVHVPAEGYSFPVKFRENTFVSENMNTFNCQVDPPFIGYAKPWVDLDTGDTRCLFFP
YSPEHLVHSMSRSKDTKPHVSFSINASVKEGRHVSGSASALLIGGFSVAWPNKLNMNPDS
NKTTISVQGNTDVQINWQNKARLSINLIKREDYGIAGRALYEVNVLKRSEQFTDIILITL
PATGQRIEIDFSYVTGESLVAPSVRKDGYPFVFKILWGVLVVIVSVIILMKVIDNRPIGP
AGATRVATNGVAATTGAPGTPERRSGAVIYHEESPRTPSPFMEYVKRTVDETPYYRREGR
RRFNPQNTM
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtctctcatcgtgcttcttcgtcgtggttctggttctactttcgattcgagaa
actttttcagagttaggttctggtccgcacataaccgatgtcaatatactattgcctccg
aggatgaagaacccagtagagtatcgcctccaaggaagtggtggctgcttcaaatggtca
tgggaccatcatgatattctctcggtcacgcctgagtttaattcgagcagtcattgctcc
accagcgcgcgtctgagatctatttcaccttacagtgggaggaaggagaccgcagtttac
gccactgatacacagacggggatggtgattcgctgcaaggtgtttattgacaacttctca
cgcattcagatttttcataactctatcaagcttgatcttgatggactttccatgcttcga
gtccgcgcttttgataatcaagaaaacgagttctcctcactggtgggtctacagttcatg
tggaagctgatgcctgagagtggtggaacaacgcatcatcttgctcatgtgcctttgaag
gaatctccattgactgattgtgggggactgtgtggctacttggatatccagaaaaagctt
gaagatagtggggtatttgcagatttgtttgtggtcaagggaaccaaaatcggacatgag
aaggtttcagttcatctgttggaggcaccgcttacccacatagccgatgaaattgtacta
acggtagcagaggccatgtcacttgaacctcgttcaccagtctatgtcctgatgggagct
tcttttggttacactttaaaggtcatgcgcgggaatgttcctcaagccgtgcatctacca
tcatcacatcatagatggtctgcgttgaactcctcggttgttcaagtggattctttgata
ggtctgactaaagcattaagcttgggggtaacaactgttgtggttgaagatacacgggtt
gctggccacattcaaggatcatctattaatgttgtcactccagatgcttttatcttgtat
atatcaccttggtcgacgtcagtggatcctactacagaattgaaatcttttccgtcatct
atgcattggtatgtggtctctggtcgtcaatatctaattcagatgaagattttttctgga
agacctgatgcacatgaaatctatataactgagacggatgatatcaaactgtacggacaa
gagacagattactggaaaatcgtctcggtgccagatgatctgtcctctgaatatggttgg
cgaaattctaaaattttgaaagcaatctcaccaggattaggagaggtgacagctacattg
acttacttcaatgggcatcagaattcaaaagaggttctgaaggttgtccaagacattatg
gtttgtgaaaaagtgcagttcacattgaacagtgaagatgacacacctaagattctactc
ccttggacccctgctgtatatcaagagatggagctacttgtgacgggaggttgtgcgaaa
gcatcgagtgactacaagtggtttacttcagatatgagcattttgtctgtgtcagcttat
ggaattatccaggcaaagaggcctggaatagccactgtaaaggtggtgtcgactttcgat
tcacaaaatttcgatgaggttattgttgaagtttccattccatcctctatggttatgttg
caatactttccagtagagacagtggttggatcacacctgcaagcagctgtcacaatgaag
gctttaaatggtgcctcgttctctagatgtgatgctttcaattcattgataaagtggaag
acagggagtgactcttttgttatagttaatgcaacatccgagatgatgatgttggaagaa
ttaagaagcacgggatccagtcctccttgttctcgggcttatttatatacttcatctcct
ggccgcacagtgctacaggctactctggcgaaagagttccactattttgataagtcatta
agtgaatcaattgatttaaaagcaacttcaagtatcggggcctatcagccacttactatc
agacaagatagtgatgggaatcatcatggtgggtattggtttgataagacacaagaagaa
actgatgttggggtcagtaacatctatcttgtacctgggacatatgttgatgtgacgctt
ctggggggacctgaaaggtgggatgacaatgttgagttcaccgagactgtgactaaagtg
aatgaagataaggaagatcttacaaatggagataacatctatcacaactttgacggccat
gttaacatgtttagagtttcgtgccagacacttggctcttataaattggtcttccagcgt
ggaaatctggtgggggtggaccatcctttacctgcagtggcagaagctttcttatttgtt
caatgcagcttaccatcctctgttgtgctcattgttgatgaacctgttaacaagcttgat
gtgattagagctgctagtctagctgaccgggcaccaggacgacttcgtgtaactcctgtg
actgtagcaaatgggcaaataattcgagtggctgctgttggtattagcgactcgggagaa
gctttttcaaactcctcaactctttcactcaggtgggaactgagtagttgcgacaatttg
gcatcttgggacgatgattataatttaaaaatgacaaagactagctgggagagatttcta
gctcttcataatgaatctggattgtgcactgtccgggctacagtttctggtattgatcat
tctggaaaaccccaatactcatctctacttccagaagtgtccaaaagtactcttacagat
gctgtacgattacagttggtttcgacactaagagtgacgccagagttcaatctggttttc
ctcaatcctaatgccaaggttaatttgtcaatgactggaggaagctgtttgtgggaagca
gttgtgaatgatcctcatgtagcagaagtggttaaacccccatctggcctgcaatgctcg
caaatgaccctgtctccaaaagggttagggactacacttgtgacagtatatgatattggg
gtctctcctccactttcagctcttgcggtgattaaagttgcagacatagactggataaaa
attgcatctggggacgagataagtataatggaaggaagtacacactcctttgatctattg
actggcattaacgatgggataacctttgattcttcccagtacccgctaatggatattatg
gtgcatattgaggatgatctcgcggagcatgtttctgttgatgataatccactttctgtt
ggtgaacacgtggcaacttcttcattcaaagtagctgctagacgcctgggaatcacaaca
ctatatgttagcgcaagacgacaatcaggagataaagtggtgagccaaaccattaaagtg
gaagtttatgccccaccaagacttcatccacaaggaatatttcttgttcctggtgcttct
tacatgttcactgttgaaggaggcccaaccatgaatgtttctctttactacacaactgtg
gataaacaagttgcaaagatcgagaaatcaggacgactctatgcaacatcacctgggaac
acgacaatctatgcaacaatatatgggagtgaaggtactgtagtttgtgaagcagttgga
aatgccgaagttggacttcctgctactgcaacgctgatatctcaaagtgatactgtggct
gttggccgtgaaatgcctatatttccatcattttctcagggagatcttttgtctttctat
gaactctgcagagcataccgatggactatcgaagatgagaaggtgttaagtttccatgta
ccgtctattgtcgcggaagagaatgccggctttttcaatgttgtccaaggaagatcagct
ggaaaaaccagagtcaccattgcgttctcatgtgatttcgtgtctcctggcttgtactcc
gaatctagaacatacgaagcatcaatagttttatctgttgtgcctgatctccctctttct
ctcggggttcctatgacctgggttcttccgcctttgtatacgtcatctagtctattgcca
tcatcgcctgagacaccgaagcacaaggatggtcaaagtcacaggggcaatgtagtctat
tccctattgaaagactgtagttctcgggctgacgtcgaacgagataccatatcaattgac
ggcggaagcatcaaaactacagaaatcaacaatgttgcatgtattcaagccaaagaccgc
acaagtggaaggatcgagattgctgcttgtgtgagggttgcagaggttgctcaaataaga
atgaagagtgaagtgatccctttccaccacgtggatcttgctgtcggtggtgaacttgaa
cttccaattaattactatgacactttaggaatcggttttctcgaagcacatggtgttact
acatacaacgttgaaaccaatcatcgtgatgttgtgtctattaagactgtcaatgaccaa
acaagtgtctacatcaagggaattaaacatggtaaagctttaattcgggtctccattggc
ggtaatcccaggaaagcagactacgttctggtttcagttggggcgcatatccatcctcaa
aaacccgtcattcacactggaaatatgctgaatttcagcgttacaggggctgatcgtcaa
gtctctggtcaatgggtttcatcaaacaggagtatcctatccgtcaatgcagtatccggc
caagctaaagcaatcggccaagggtcagctcacgttatatttgagggtcatgatctgaag
ctgcaaacaaaagtcacagtgctacttggaaacaccatatatgttgactctcctagagaa
acactaacaaatgttcacgtccctgcagaaggatatagctttccagtaaaattcagggag
aatacgtttgtgagcgagaacatgaacacatttaactgccaagtagaccctccatttata
ggatatgcaaagccatgggtggatcttgacactggagacactcgttgtcttttcttccca
tactcaccggagcatctggttcactcaatgtctagatcaaaagacacgaaaccgcatgtg
tccttctccattaatgcttcagtcaaagaaggtcgacatgtgtcgggatctgcgtctgca
cttcttattggagggttttctgtagcatggccaaacaagttgaatatgaacccggattca
aacaagaccacaatttcagtacaagggaacaccgatgttcaaattaactggcaaaacaaa
gcaaggttgtcgatcaacttgatcaagagagaagattatggtatcgcagggcgtgcacta
tacgaggtgaatgtgctaaaaagatcagagcagttcacagatataatactcatcactctt
cctgctactggccaaaggatagaaatcgatttctcctatgtcacgggtgaatccttagta
gcgccgtctgtgagaaaagatggatacccttttgtgtttaagatactgtggggtgtttta
gtggtgattgtatcggtgatcatcttgatgaaagtgattgataatagaccaattggtccg
gctggagctactagagttgcaacaaacggtgtagcagcaacaacaggagcacctggaaca
ccagaaagaagaagtggtgcagtgatataccatgaggaatctccaagaacaccatcacca
tttatggagtatgtaaagaggactgtggatgagactccttactacagaagagaaggaagg
aggaggtttaatcctcaaaacactatgtag
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integrated database retrieval system
