Raphanus sativus (radish): 108817472
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Entry
108817472 CDS
T06014
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108817472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108817472
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108817472
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA_23
Arf
AAA
Zeta_toxin
nSTAND6
ORC-CDC6-like
AAA_30
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108817472
NCBI-ProteinID:
XP_018445670
UniProt:
A0A6J0LX51
A0A6J0KCE6
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Position
7:complement(237133..239281)
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AA seq
324 aa
AA seq
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MEEEKRHSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSLKLNSSERYLLVGSNGAGKTTI
LKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISA
EKMIFGVAGIDPQRRAELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEIT
VDLDVLARADLLTFLRKECQERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAMPMEKV
KETSKKSLMRTVESWLRKERDEERKTRRERKANGLPEFETRAEESRVTGDPARMLNNGWA
AGRLHSTIAGGEEHFVLSSNRVLR
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagaagcgacattcaacggtggagatctctggattacgcttcacgtatcca
ggaatcgacggccatccacctccgggatcaaaaccgcttatcgaggatttctctctgaag
ctcaattcgagcgaacggtatctcctcgtcggatccaatggcgccgggaaaacgacgata
ctgaagatattgggagggaaacacatggtggagccgcacatggttagggttcttggtcga
tctgcgtttcatgacaccggtttgacctcttctggtgatctctgctatctcggcggcgag
tggaggcgtgatgtggcatttgcaggatttgaagttccgattcagatggacatttctgct
gagaaaatgatatttggagtggctggtattgatcctcagagaagagctgaacttatcaag
gtgttggatattgatatctcatggagattgcacaaggtctctgatggccagagaagacgc
gtccagatttgtatgggactcctcaagcctttcaaggttctccttttggatgaaatcact
gttgatcttgacgttctcgccagagccgatcttttgacatttctgagaaaggaatgccaa
gaacgaggagctaccattatctacgccactcatatattcgatggtcttgaggattggcct
actcacattgtgtatgtagcaaacgggaagttgcaattagctatgccaatggagaaagtg
aaggaaacaagcaagaagtcgttgatgagaactgttgagagttggttgaggaaagaaaga
gacgaggagcggaagactaggagagaaaggaaagccaatggccttcctgagttcgaaaca
cgtgctgaagaaagccgtgtcaccggtgatcctgctcggatgctcaacaatggctgggct
gccggcagacttcactctaccattgcaggaggtgaagagcatttcgtccttagctcaaac
agagttctcagataa
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