Raphanus sativus (radish): 108819015
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Entry
108819015 CDS
T06014
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108819015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108819015
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108819015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
AAA_25
ORC-CDC6-like
SMC_N
AAA_28
NACHT
AAA
AAA_15
AAA_23
AAA_18
AAA_5
SRP54
AAA_30
PduV-EutP
AAA_33
Zeta_toxin
AAA_22
AAA_13
DLIC
AAA_24
Arf
AAA_16
AAA_14
Motif
Other DBs
NCBI-GeneID:
108819015
NCBI-ProteinID:
XP_018447501
UniProt:
A0A6J0KJ20
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All DBs
Position
8:265636..267514
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AA seq
292 aa
AA seq
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MAAKYPETTSDDAIRVSGMEFSYEADDPIFFDFNLDLPAGSRCLLVGANGSGKTTLLKIL
AGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMI
FGVEGIDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLD
VVARMDLLEFFKEECDQRGATIVYATHIFDGLETWSTHLAYIQNGELNRSSKMADINEMK
TSPNLLSVVESWLRSETKLVKEKKKKEPVAAWKPSPFDNSPFRSSRHMAYYR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaatatccggagacgaccagtgatgatgccattagagttagcggtatggag
ttttcttatgaagccgatgatcctatattcttcgatttcaacctcgatcttccagctgga
tctcgctgccttcttgttggcgccaatggatctggcaagacaaccttgttgaagattctg
gctggaaagcatatggtgggaggaaagaacgttgtgcaagttcttagccgctctgctttc
catgatactcaacttgtttgcagtggcgacttgtcttaccttggaggatcctggagtaaa
accgttggttcagctggtgaggttcctctccagggagacttttcagcagaacatatgata
tttggagttgaaggaatcgatccggtgagaagagagaaactgattgatcttcttgacatc
aaccttcagtggcgtatgcataaggtttctgatggtcagaaacgccgagttcagatatgc
atgggactcttacatcccttcaaggtgttgttacttgacgaggtcactgttgaccttgat
gttgttgcaaggatggatttgttggaattcttcaaagaagaatgtgatcagagaggagct
acgattgtatatgcaactcacattttcgacgggctagagacatggtctacacatttggcc
tacattcaaaacggtgagctgaatcgttcatcgaaaatggcagatatcaacgagatgaaa
acttcacccaacctcctctccgtggtagagtcttggctccgttctgaaaccaaacttgtg
aaggaaaagaagaagaaggagcctgtggcagcatggaaaccatctccatttgataactct
ccttttaggtcatctagacacatggcttactaccgatga
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