Raphanus sativus (radish): 108827613
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Entry
108827613 CDS
T06014
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108827613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108827613
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108827613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
108827613
NCBI-ProteinID:
XP_018456556
UniProt:
A0A6J0LAK6
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Position
9:34826042..34832398
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AA seq
932 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEEPGLGGLDITRPNPNGYEFDNLYLDMNGIIHPCFHP
EGKPAPATYDDVFKSMFEYIDHLFTLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEEMLRQDFELGGQTLSAKAKAETSDSNVITPGTPFMAVLSVALQYYIQSRLNRS
PGWRFVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHE
VHFSIFREVITYPGQQEKCFVCGQTGHFAADCPGKSGGANAAADIPIHKKKYQFLNIWVL
REYLQYELAIPDPPFTINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRN
EFTAMGGYLTDSGEVLLDRVEHFIQAVAANEDKIFQKRTRIKQSMENNEEMKQRSRRGPS
EIPPEPIEDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDLVLKYVEGLCWVCRYYYQG
VCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKL
MTDPSSPILKFYPSDFEIDMNGKRFSWQGIAKLPFIEEKLLLASTRKLEQTLTVEERQRN
SVMLDLLYVHPNHPLGQRVMQYYQFYNQLPPNECLPWMIDPNASQGMNGFLWFSERNGFQ
TRVVSPVNGLPCIEQNRALNVTYLNPAKHSHIPEPPRGAIIPDKILTPLDIKPFPALWHE
DNSNRRRQARDRPQVAGAIAGNTLGEAAHRLIKNTLNMKSSTGFSASGLIDPNSYNRNIP
GNYQYGGPRAAGSSSYRKSYGDDSSYYYQGNYNSSSQGMYSNGPRYPGPLNGSPDYNRNY
NKQQNRGGIRAGLSTEDNNGRSKQQSYSSYTEAANANINPLPSPPTQWTGTATQGGNLGG
GYYREGVGYGEMNGKKVIYQPKTQPSHRGSNE
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttttacagatggctcgccgaccgataccccaagtcaatcagcgac
gtcgttgaggaagaaccgggtctcggtggcctagatatcaccagacctaaccctaacgga
tacgaatttgataatctgtacctcgacatgaacggtatcatccatccttgtttccatcct
gaaggaaagcctgcacctgccacatatgatgatgtattcaaatcaatgttcgagtacatt
gaccatctatttactttagtgcgtcccaggaagcttctttatttggctatagatggagtt
gcgccaagagcaaagatgaatcagcagcgttctcgacgattcagagctgcaaaggacgca
gcagaagctgaagctgaggaagagatgctgagacaagattttgagcttggggggcaaacc
ttgtctgctaaagcgaaagcagagacctctgattcaaatgtcattactcctgggaccccg
tttatggctgtactctcggtagctcttcagtattacatacagtctaggttaaatcgtagc
cctggttggagatttgttaaggtaattctctctgattcaaatgttccgggggaaggagaa
cacaagataatgtcatacattcgtcttcaacgtaatcttcctggtttcgatccaaatacg
cggcattgtctgtacggtctggatgcagatttgataatgctgtctttagccacacatgaa
gttcacttttcaatctttagagaggttatcacttaccctggccaacaagagaaatgtttt
gtgtgtggacaaactggtcattttgctgcagattgccctggaaaatcaggtggcgcaaac
gcagcagctgatattccaatccacaagaaaaaatatcagttcctgaacatctgggtgcta
cgagaatatctgcaatatgaattggccatccccgatcctcctttcaccatcaacttcgag
agaattatagatgactttgtattcctttgcttctttgttggcaatgatttcctgcctcat
atgcctacattagaaattcgagagggggctataaacttgcttatgcatgtttacagaaat
gaatttacagctatgggaggctatctaactgattctggtgaggttttattagatagggta
gagcatttcattcaagctgtcgcggcaaatgaagataaaatatttcagaaaaggacgcgg
ataaaacagtcaatggaaaacaatgaagaaatgaaacaaagatcaagaagaggcccatct
gaaataccaccggaaccgatagaggataagattaagctgggagagccgggttacaaggag
aggtattatgctgagaaatttagtacgaccaatccagaggaaactgagcaaatcaaacaa
gacttggtactaaaatatgttgaaggtttgtgctgggtttgccggtactactaccaaggt
gtatgctcttggcaatggttttacccataccactatgccccatttgcttcagatcttaag
aatctatctgatttggaaatcacatttttcattggagagccctttaaaccttttgatcaa
ttaatgggaaccctgccggctgcaagctcaaatgctctacctggagaataccggaagttg
atgactgatccctcatctccgatcctgaaattttacccttctgattttgagattgacatg
aatggaaagcgcttctcttggcagggtattgcgaaacttcctttcattgaggagaagtta
ttgttagcatctacaaggaagcttgaacaaacgctaacggtggaagaacggcaacgcaac
agcgtgatgcttgatttgttatacgtacaccccaatcatccactgggccagcgggttatg
cagtactaccagttctacaaccagttgccaccaaatgaatgtcttccatggatgatagac
ccgaatgctagccaagggatgaacggtttcctgtggtttagtgaaaggaacggtttccaa
actagagttgtttctcctgtcaatggcttgccatgcattgagcagaaccgagccttaaat
gttacatacttgaatcctgccaaacactctcatatcccagaaccaccaagaggagctatc
attccggacaagatcttgacgccgttagatataaagccatttcctgctttatggcacgaa
gacaatagcaaccgacgccgacaagctcgagatagaccacaagtggctggtgctatagcc
ggaaatacactgggagaagctgctcatcgtctgatcaaaaacacccttaatatgaaatct
tccactggtttttcggcttcaggattaattgacccaaactcatacaaccgaaatatacct
ggtaattatcagtacggtggaccaagagcagcgggttcctcttcttacaggaaatcatat
ggcgatgactcgagctactactatcaaggaaactataacagtagttctcaaggaatgtac
agcaacggtccgagatatcctggtccattaaatggatcaccagactataaccggaactac
aacaaacaacagaaccgtggtggaatcagagctggtttatcaacagaagataacaacggc
agaagcaaacagcaatcgtattcaagctatacagaagctgctaatgcgaatatcaaccca
ttgccatcaccgccaacacaatggactggtacagcgacgcaaggtgggaatctcggcggt
ggatactatagggaaggagttgggtatggtgagatgaatggaaagaaagtgatttatcag
cctaagacacaaccaagtcatcgaggctcaaatgaatga
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