Raphanus sativus (radish): 108828178
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Entry
108828178 CDS
T06014
Name
(RefSeq) lycopene epsilon cyclase, chloroplastic isoform X2
KO
K06444
lycopene epsilon-cyclase [EC:
5.5.1.18
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00906
Carotenoid biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
108828178
Enzymes [BR:
rsz01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.18 lycopene epsilon-cyclase
108828178
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Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
HI0933_like
GIDA
FAD_binding_2
FAD_oxidored
Thi4
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
108828178
NCBI-ProteinID:
XP_018457279
UniProt:
A0A6J0LCD6
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Position
9:complement(7196084..7198857)
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AA seq
528 aa
AA seq
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MECVGARNFAATAAFTAFPSWSSSRRIFPVVNRCSFSHLRLCTVRASGGGAGSGCVAVRE
DYADEEDFVKAGGSEILYVQMQQNKDMDEQSKLVDKLPPISIGGDGGALDLVVIGCGPAG
LALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFNDLGLQKCIEHVWRDTIVYLDDGNPI
TIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVESITEAPDGLRLVSCEHNTVVPCRLA
TVASGAASGKLLQYEVGGPRVCVQTAYGVEVEVENSPYDPEQMVFMDYRDYTNEKVRSLE
AEYPTFLYAMPMTKTRVFFEETCLASKDVMPFDLLKNKLMLRLDTLGIRILKTYEEEWSY
IPVGGSLPDTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIADILNQESTTSFTR
HINTNISRQAWDTLWPPERKRQRAFFLFGLALIVQLDIEGIRCFFHTFFRLPKWMWRGFL
GSTLTSGDLVMFAFYMFIIAPNALRKGLINHLISDPTGATMIKTYLRV
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgttggtgctcgcaatttcgccgcaacggcggcgttcacagcttttccgtct
tggagttcttcgcgtagaatcttcccggtggttaatagatgcagctttagtcatctccgg
ttgtgcacagtcagagctagcggcggcggagcaggttccggttgcgttgcggtgagagag
gattacgccgacgaggaagacttcgtcaaggctggtggttcggagattctttacgttcaa
atgcagcagaacaaagacatggatgaacagtctaagcttgttgataagctacctcctata
tcaattggtggtgatggtggtgctttggacctagtggttattggttgtggtcctgctggt
ttagctttggctgctgaatcagctaagttaggtcttaaagttggactcattggtccggat
cttccttttacaaacaactacggtgtttgggaagatgaattcaacgatcttggtcttcaa
aaatgtattgagcatgtttggagagatactattgtctatctggatgatggcaatcctatc
accatcggtcgtgcttatggaagagttagtcgacgtttacttcacgaggagctcttgagg
aggtgtgtggagtcaggtgtctcgtatcttagctccaaagttgagagcataacagaagct
cccgatggccttaggcttgtttcctgtgaacacaacaccgttgttccgtgccggcttgcc
actgttgcttctggggcagcttcagggaagctcttgcaatacgaagttgggggtcctaga
gtctgtgtccaaaccgcttacggcgtggaggttgaggtggaaaacagtccatatgatcca
gagcagatggtgttcatggactacagagattatacaaacgagaaagtccggagcttagaa
gctgagtatccaacgtttctctacgctatgcctatgacaaaaacaagagtattctttgag
gagacatgtcttgcttcaaaagatgtcatgccttttgatctgctaaaaaataagctcatg
ttaagattagatacacttggaatccgaatactaaagacttacgaagaggaatggtcttat
atcccagtaggtggttccttgccagacactgaacaaaagaatctcgcctttggtgctgca
gctagcatggtacatcctgcaacaggctattcagttgtgagatctttgtctgaagctcca
aaatacgcatcagtcatcgcggatatactaaaccaagagtctactacttccttcaccaga
cacatcaacaccaatatttcaagacaagcttgggatactttatggccaccagaaagaaaa
cggcaaagagcattctttctctttggtcttgcgctcatagttcaactcgatatcgaaggc
attagatgcttcttccacactttcttccgccttccaaaatggatgtggcgagggtttcta
ggatcaacattaacatcaggagacctcgttatgtttgctttctacatgttcatcattgca
ccaaacgctttgagaaaaggtctcattaatcatcttatctctgatccaaccggagcaacc
atgattaaaacttatctcagagtatga
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