Raphanus sativus (radish): 108851932
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Entry
108851932 CDS
T06014
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108851932
09123 Folding, sorting and degradation
03018 RNA degradation
108851932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108851932
03041 Spliceosome [BR:
rsz03041
]
108851932
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108851932
mRNA degradation factors
5'-3' decay
Lsm complex
108851932
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108851932
Complex C
U2 snRNP components
108851932
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Motif
Other DBs
NCBI-GeneID:
108851932
NCBI-ProteinID:
XP_018480912
UniProt:
A0A6J0N887
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Position
1:complement(9339390..9340435)
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AA seq
97 aa
AA seq
DB search
MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE
IDDETYEEIVRTSKRKIPFLFVRGDGVILVSPPLRTT
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcgaggaagacgccaccgttagggagccactggatctgattcgattgagcatc
gaagagagaatctacgtcaagctccgatccgaccgcgaactccgcggcaagcttcacgcg
tttgatcagcatttgaatatgattctgggtgatgttgaagaggttatcacgactgtagaa
atcgacgacgagacttacgaagagattgttcgtacatcgaaacgaaagattccgtttcta
tttgtgagaggagatggagtgatcttggtgtccccgcctttgaggactacttag
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