Raphanus sativus (radish): 108863609
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Entry
108863609 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor PIF6
KO
K16189
phytochrome-interacting factor
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108863609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108863609
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108863609
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GFIT
Motif
Pfam:
bHLH_SAC51
HLH
bHLH_LHW
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
108863609
NCBI-ProteinID:
XP_018493597
UniProt:
A0A6J0P9E8
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Position
5:complement(28019625..28021172)
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AA seq
332 aa
AA seq
DB search
MELVFENGQILAKSQRSNGLSLQNQRTKSIVDLYEAEYNEDFKKSVHIHDVDTSNKNLVD
TQVFPEPLVVAAYETNMLXMNQLNLIQTLKASSSKRMVVDYENRNDIVPPDEQSAVAERS
VELGYESTDFTEDSEESTYQSSSLDDVRPQVPAITSKVLVKRRRKQKQTDINKKMRNLQD
LLPNSQKDDNEALLDEAINYMTTLQLQVQMMAMGNRFVTPATVLPLGPHYSQMGLATGMP
MGVPQLLPAPVLGAGLPLVGNSPDVLRVLNHPGLMPIQNSALFTPTENYLPQSVPPPSAA
LPKKIPNPTTSSNLNDASQMGGNLSVKESDKP
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgtgtttgagaatgggcagattcttgcaaagagccaaagatccaatggcctt
tctctgcagaatcaacgtaccaaatcgatcgtggatttgtacgaggccgagtataacgag
gatttcaagaagagtgttcatattcatgatgtcgatactagtaacaagaatcttgtagac
acacaggtttttccagaacctcttgttgttgctgcatatgaaacaaacatgctcntgatg
aatcaacttaatttgattcagacgttgaaagcttcttcatcaaagaggatggtggttgat
tatgagaaccgaaatgatattgtacctccggatgagcaatctgcggttgctgagagatcg
gttgaattgggctatgaatccacagattttactgaagacagtgaagaatcgacgtatcaa
agcagtagcctagatgatgtgaggccacaagttcctgcaattacaagcaaggttttggtc
aagagaagacgcaaacagaagcaaacagatatcaacaagaaaatgcgtaatctgcaggat
ctactacctaattctcaaaaggacgacaacgaagcattactagatgaagcaatcaattat
atgacgacccttcaacttcaagttcagatgatggcgatgggtaacagatttgttacacca
gcaacggtgttgcctttggggccgcattactctcagatgggtctagcaacaggtatgcca
atgggcgtaccacagcttctccctgcgcctgttctaggagctggcttgccattggttggt
aactcgccagatgtgctaagggttctcaaccatcctggactaatgccaattcaaaactca
gcacttttcacaccaacggaaaactatttgccccaatctgttccgccgccgtctgctgct
ttgcctaagaaaataccaaaccccaccacttcgtcaaatctaaatgatgccagccagatg
ggaggaaacctctcggttaaagaatctgataaaccgtga
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