Raphanus sativus (radish): 130496996
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Entry
130496996 CDS
T06014
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130496996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
130496996
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130496996
Complex C
U5 SnRNP specific factors
130496996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Septin
Roc
EF-G_D2
SRPRB
Ras
Motif
Other DBs
NCBI-GeneID:
130496996
NCBI-ProteinID:
XP_056845757
UniProt:
A0A9W3C2N8
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All DBs
Position
6:9671370..9674776
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AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDDEIEDEEFQDKQPEEDGSDGERGPGGSNGWITTIND
VEMDNQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEMPIIKPVRDVRFEVGVKDST
TYVSTQFLVGLMSNPALMRNVALVGHIQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTD
TRVDEQERNISIKAVPMSLVLEDSRSKSYLCNVIDTPGHVNFSDEMTASLRLSDGAVLIV
DAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHI
SAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKLYSKLHGVDMDVDKFASKLWGD
VYYHPDTRAFKRSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNS
AYKLNVRPLLRLACSSVFGSSSGFTDMLVKHIPSPKEAAARKVDHAYTGPKDSAIYEAMV
ECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGTLQTGQSVRVLGEGYSPEDEEDMTIKE
VTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNENYDEDVFIFRALQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS
IDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLMMAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAWIAPEPLHRGSGQMIPTARRVAYSSFLMATPR
LMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKSILLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSGNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgatgagtttggtaactacattggacctgagatcgagtccgac
agagagagtgatgacgaaatagaagacgaggagttccaggataagcagcctgaagaggat
ggatcagatggagagcgtgggcctgggggttctaacggatggatcaccacgatcaatgac
gtggagatggataaccagattgttctccctgaggataagaagtactatcctaccgcggag
gaagtctacggggaggacgttgagacgttagtcatggatgaggatgagcagcctctcgag
atgccgattatcaaacctgtcagagatgtcagattcgaggttggggtgaaggattccacg
acttacgtgtcaacgcagtttctcgtcggcctcatgtctaatccagcgcttatgaggaat
gttgctcttgtgggtcatatacagcatgggaaaactgtcttcatggatatgttggtagag
cagacgcaccatatgtctacttttaatgctaagaacgagaagcacatgaagtatacagat
acaagagttgatgagcaggagaggaacatttcgatcaaggcggttccgatgtcgcttgtc
cttgaggacagcaggtctaaatcatatctgtgcaatgtcatagatactccgggtcatgtg
aatttctctgatgaaatgactgcttctctaagactctctgatggtgctgttctaattgtt
gacgctgctgaaggagtgatggtgaacactgagagggctataagacatgcaatccaggac
catcttcctattgttgttgtgatcaacaaggttgacaggcttattaccgagctcaaacta
cctccaagggatgcttattacaagctgaggcatacaattgaagtcattaataaccacata
tctgctgcttcgacgactgctggaaacttgccccttatagaccctgcagctggaaacgtg
tgctttgccagtggtactgccggatggtccttcactctgcagtcttttgctaaactgtat
tcgaagcttcatggggtggacatggacgtggataagtttgcatctaagctttggggagat
gtgtattatcaccctgatactcgggcgttcaagagaagtcctccagtaggtggtggggaa
agagcatttgttcagtttattctagagcctctatacaagatatacagtcaagtgataggt
gagcataagaagagtgtagagaccacccttgcagaactgggagtgaccctgagtaatagt
gcatataagctgaacgtcagacctctacttaggttagcctgtagctcagtctttggttcg
tcatcaggcttcactgatatgttggtaaagcacattccttctcccaaagaggctgcagct
aggaaagtggaccacgcatacactggacccaaagattctgccatttatgaagcaatggta
gaatgtgatccgtctggacctctcatggttaatgtgacaaagctataccccaaatcagat
actagtgtgtttgatgtattcggaagagtttacagcggtacacttcaaacagggcaaagc
gtacgtgtacttggagaagggtattcacctgaagatgaagaggacatgactatcaaagag
gtgaccaagctgtggatataccaagcgaggtataggattcctgtaagcagtgcccctccc
ggttcatgggttctgattgaaggcgtggatgcgtctatcatgaagacggcgacgctctgc
aatgagaactacgatgaagacgtcttcatattccgggctctccagtttaatactcttcca
gttgtcaagactgctactgagcctttgaatcctagtgagctacctaaaatggtggaaggg
cttaggaagattagcaaaagctatccccttgcgattaccaaagttgaggagtctggtgaa
catactattctaggcacaggggagctgtacctggattctatcatgaaggacctcagggag
ctctattcagaggtcgaagtaaaggtcgcagatccggttgtttccttttgtgagacagtg
gttgaatcttcgtcgatgaagtgttttgctgagacaccgaacaaaaagaacaaaataact
atgatcgcagagccattggatagaggacttgcagaggacattgagaatggtgtcgtaagc
attgactggaacagaaaacaactcggggacttcttcaagacgaaatatgactgggattta
cttgcagcacgttccatttgggcgtttggccctgacaaacaggggccaaatattttgctg
gatgacacgctcccaactgaggttgacaagaacttgatgatggcagtgaaagactccatt
gttcaagggttccagtggggagcgcgagaaggaccattgtgtgatgagcccatcaggaat
gtcaagttcaagattgttgatgcctggatagcaccagagccgttgcatcgaggatctggt
cagatgattccaacagcacgtcgcgttgcttactcatcctttctcatggccactccaagg
cttatggaacctgtttactacgtcgagatccaaacacccatcgactgtgtaactgccatc
tacaccgttctatcacgtagacgtgggcacgtcacatcagatgttccccagcccggcacc
ccagcctacattgtgaaggctttcctgccagtgatagagtcctttgggtttgagacggac
ctgaggtatcacacacagggacaagccttctgcgtgtctgtctttgatcactgggccata
gtaccaggagaccctctggacaaatccatcctgttgcgcccacttgagcctgcccccatc
cagcacctagctcgcgagttcatggtgaagactcgccgtagaaagggaatgagtgaggac
gtaagcgggaacaagttctttgatgaagcgatgatggtggaactagcacagcagacaggt
gatctgcatctccagatgatgtga
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