KEGG   Raphanus sativus (radish): 130501668
Entry
130501668         CDS       T06014                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130501668
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    130501668
Enzymes [BR:rsz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     130501668
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     130501668
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 130501668
NCBI-ProteinID: XP_056852480
UniProt: A0A9W3CLS6
LinkDB
Position
Unknown
AA seq 1449 aa
MEEECEELEVPMGTLKSIRFSISSNKDRKNMAVMDVEAANQVTDSRLGLPNPDSVCRSCG
SKDRKVCEGHFGVINLKYPVINPYFLKEIAALLNKICPGCKYMRKKQSQSSEDRPERCRY
CTSNTGYPLMKFRVTTKEVFRGSGIVCEVSEDNLFKLSKRGLSSLPPDYWEFLPKDSNID
ESCLKPSRRILTHAQVYALLCGIDERLIRKDIPMFDSLPLSSFPVTPNGHRVSEMVNQFT
GARLVFDERTRIYKKLAGFEGNGLELSSRVIECMQYSRLFSENMSPSQESANPYQKKSDT
PKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRRISERLQVSENLNDWNRER
LVTSCFHKLLERGETHVRRGGNLVAIRVIDDLQTGDSILRTLKDGDTVLMNRPPSIHQHS
LIAMSVKLLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLVN
RQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAQMQQLQMYCPFELPPPAIIKASPTSREP
QWTGMQLFGMLFPPGFDYTYPLNDVVISNGELLSSSDGSAWLRDGEGNFIQGLLKDHKEK
VLDIMYSGQEMFSQLNRGLSVSLADLYLASNPQARRNLTEEIKYGLQEAEQVCNKQQLMV
ESYRDFLAGIVEEEEXSVADLDRFCYDRQRSATLSKLAVSAFKDAYRDVQALAYRYGDQS
NSFLIMSKAGSKGNMGKLAQHSMCVGLQNSSVALSFGFPRKLTCASWNDPNSPLRGAERQ
DETAHESFVPFCVIENSFLTGLNPLESFVHSVTSRDSSFSGNADIPGALNRKLMFFMRDI
YAAYDGTVRNSFGNHLVQFRYETADEDITGEAVGSLSACALTEAAYSALDQPISLLETSP
LLNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALDIKNHLEKLCFSEIVSTSM
IIFSPRSNTKMPMSSWVCHFHISKKVLKQKQLDLESVVSSLNKQYANRKKELKLDVIDLE
IQSTNHCSWDDKSMDGDRLCITVTVVEASTQDSLELEAIRLVLIPFLLDSPVKGYRDIKK
VEILWVDRPKAPKKHMEGELLLKVTMHGVRGKKNIWSALLETCLPIMDMIDWTRSHPDNI
RQCCSVYGIDAGRSIFLADLESAVSDTGKAMLREHLLLVADCLSVTGEFVALNPKGWSKQ
RQAESTPAPFTQACFSSPSQCFLKAAKEGVTDELQGSIDALAWGKVPSFGTGDQFEIIIS
PKNHGFSSTPVDVYDFLSKTATLPKRKAVRATSSLLKSDKFTVQSFPSLDTALSKAVKTL
DGKGLTRSQLRMIFTWDDIEKLSRSLKRILYNYEIDAPLNERDGRLLMMALLFHPNRDEK
IGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNFYKAKYLR
KGTGQAGTI
NT seq 4350 nt   +upstreamnt  +downstreamnt
atggaggaggaatgcgaggagcttgaggtgcctatggggactctcaaatctataagattt
agcatttctagtaacaaagaccgaaagaacatggctgtcatggatgttgaagctgcaaat
caggttactgattcccggttaggcctccccaatccagattctgtttgcagatcatgtggc
agcaaagacaggaaagtctgcgaaggtcattttggggttattaacctcaagtacccggtg
atcaacccgtatttccttaaggagatagctgcattgttgaacaagatctgccctggatgt
aaatacatgcggaaaaagcagtctcagagcagtgaagaccggcctgagagatgtagatac
tgcacttcaaatacaggttaccctctaatgaagtttcgggtgaccacaaaagaagtcttt
aggggatctggaattgtgtgtgaagttagtgaagacaatctgttcaagctcagtaaacgg
ggactatcatcactacctccagattattgggagtttctgcctaaagactctaacattgat
gaaagctgtttgaaaccaagcaggcggattctaactcatgcacaggtgtatgcactgttg
tgtgggattgatgagaggctgatcaggaaggatattcccatgtttgactctcttcctctg
tcatctttcccagttacaccaaacggtcatcgtgtatccgaaatggtcaatcaattcacc
ggggcacgacttgtttttgatgaacggactcgtatctacaagaaactagctggctttgaa
ggaaatggtcttgagctgagttctcgtgtgattgaatgcatgcagtattccagactcttt
tcagaaaacatgtcaccaagtcaagaatctgcaaatccttaccagaagaagtcagacact
ccaaaactgtgcggtctaagattcatgaaagatgtgctgcttggtaaaagaagtgaccat
acgttcagaacagtagttgtaggtgacccttctctcaagcttaacgagatcggtatacct
cggaggatctctgagaggcttcaagtgtcagagaatctcaacgactggaacagagaacgg
ctcgtcacttcctgtttccacaagctgctggagagaggagagacacacgtgagaagggga
ggtaacttagtggctatcagagtcatcgatgatcttcagactggagacagcatcctacgg
acgttaaaagatggagacactgtgctgatgaacagaccgccttccattcatcagcattcg
cttattgcaatgtcggttaaactcctccctactacttccgttgtctccttgaaccctatc
tgctgtttgccgttccgtggtgactttgatggggattgtcttcacggctacgttcctcag
tcgatacaagccaaggttgagctcgacgagcttgtggctttggacaagcagcttgttaac
agacagaacggtcgtaacttgctttccctaggacaagacagcttgacagcagcttatctg
gttaacgtggagacaaactgttttctgaatcgagctcagatgcagcagctgcagatgtac
tgcccctttgagcttcctccgcctgctattatcaaagcttctcctacgagcagggagcct
caatggacaggaatgcagctgtttgggatgcttttccctccagggtttgactacacttac
cctctgaacgatgtggttattagcaacggagagcttttgtcttcctctgatgggtctgcg
tggttgcgtgacggtgaaggaaacttcatccagggtttgctcaaggatcataaagagaaa
gtgctagatatcatgtactctggtcaagaaatgttctctcaactgaatcgaggactgagt
gtttctttagcggatttgtacttggcctctaatccacaggctcggagaaacttgacagag
gagataaagtacggattgcaagaagctgaacaggtctgcaacaagcagcagcttatggtc
gagtcttatagagacttcctcgctggtattgtagaagaggaggaangatctgttgcagat
ttggaccgcttctgctacgatagacagaggtcagcaacgctaagcaaacttgcggttagt
gcatttaaagatgcgtacagagatgttcaggctctggcttatagatacggagaccaatca
aactcgtttctgatcatgtccaaagctggtagcaaaggaaacatggggaagcttgctcag
cacagtatgtgcgttggtctacaaaactcctcagttgcgttgtcctttgggtttccacgt
aagctcacttgtgcctcatggaacgaccccaacagcccgcttcgtggcgcagagagacaa
gatgaaaccgctcatgagtcatttgtcccgttttgtgtcatcgagaactcgtttctaact
ggtctgaatcctttggagtcttttgttcactccgtgacaagccgtgacagctccttcagc
ggtaatgctgatatcccgggggcgcttaacaggaagctgatgttctttatgagagacata
tacgctgcttatgacgggacagtgagaaactctttcggcaaccatttagttcagtttcgt
tatgagactgctgatgaagacataacaggtgaagcagttggatcactttctgcttgtgct
ctcaccgaggctgcttacagtgcgttagatcaacccattagccttcttgaaacttctcct
cttctgaatcttaagaatgtgttagagtgtgggtccaagaaaggtctaaaagaacagaca
atgtctttgtacttgtctgaaacactttctaagaagaagcatgggtttgaatacggggca
ttggacatcaagaaccacttggagaaactgtgtttctcagagattgtttcaacatcaatg
ataatattctctccgaggagtaacacaaagatgcctatgagctcgtgggtttgccatttt
cacatctccaagaaagtactgaagcagaaacaactagaccttgaatctgttgtctcttca
ttaaacaaacagtatgcgaacaggaagaaagaactgaagcttgatgtaattgatttagaa
atccaaagcacgaaccactgctcttgggatgataagtcaatggatggtgatagactatgc
atcacagttactgttgttgaagcctccacgcaggattctttggaacttgaggcgattcga
cttgtcttgatcccttttcttctagactctcctgtcaaaggctaccgagatattaaaaag
gtggagatcttatgggttgacagaccaaaagcgccgaagaaacatatggagggtgagctt
ttgttgaaggttactatgcatggagttcgtggcaaaaagaacatttggagcgctcttctt
gaaacatgtcttcccataatggatatgatcgattggacaagaagccatcctgataatatc
cgacaatgctgctcggtttatggaatagacgctggtcggagcatcttcctagcggatttg
gagtctgcagtgtcggataccggtaaggctatgctgcgggaacatctgcttcttgtagct
gattgcctctcagttactggagagtttgtggcattaaaccccaaaggttggagtaagcaa
aggcaagctgagtccactcctgcaccttttactcaagcgtgcttctcgagcccaagtcaa
tgctttctcaaagctgctaaggaaggtgtcacagacgagcttcaaggatctattgacgca
ttagcttggggcaaagttccttcttttgggactggagatcagttcgaaataatcatctcc
ccaaagaatcatgggtttagtagcacaccggtagacgtgtatgactttctgagtaaaaca
gcgacacttccaaagagaaaggctgtgcgtgcaacaagctccttgctcaaatcagacaag
ttcacggtccagtcattcccctcgctcgacaccgctctctcgaaagcagtcaaaacactt
gatgggaaaggactcacaaggtcgcagctcagaatgatatttacatgggacgacatcgaa
aagctttctcggtcactgaaacgcattctctacaattatgagatcgatgctccgttgaat
gagagggatgggagacttctgatgatggctcttctcttccaccccaacagagatgagaag
ataggacctggcttccaaggaattaaggtggctaattctaagcatgggaatgctcgttgc
tttgaggtggtgagaacagatgggacaacagaagatttctcttaccacaagtgtgtgttg
ggagcaacagagatcattgctcctaagagggtaaacttctacaaggccaagtaccttaga
aaaggtaccgggcaggctggtactatctag

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