Raphanus sativus (radish): 130506018
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Entry
130506018 CDS
T06014
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
130506018
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130506018
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130506018
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130506018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
SFTA2
Motif
Other DBs
NCBI-GeneID:
130506018
NCBI-ProteinID:
XP_056856600
UniProt:
A0A9W3CYC0
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MSDRRSLKRALVLVDDEEAAAKFYKLKVLLPNGTNVTLTLTNPQHEMSMRNFVNLVKEEY
DKTRKSYVLSGKMRKGIDWNLAAESYLDFNGQKIRRVVRLESFDPDSCNILRLDDGSGEA
PTMYENMWDLTPDTDMLKELPENYSFETALADLIDNSLQAVWSCSPGNRRLISVDVLEDR
ISVFDSGPGMDSSKENSIAKWGKIGASIHRSCKSKAIGGKPPYLMPFFGMFGYGGAYACM
HLGRRTLVSSKTKQSKKVFTLQLNKEALIDNRSISGKNWKVAGGMRDPLDEEMKLSPHGS
FTKVEIFESKCKIPDIYQLQCRLKDIYFPYIQCDEVSKTGRTLRPVGFQVHGEDLAEIVG
GEVATTNLNSKGEEFWFQIRFCVKSKGTSQEANARLKFVYFPIVHGKESIDIIMESLEKE
GYKVSESFQTFGRVSVRRLGRLLPEVPWASIPFMERGTIASTLRKCCQRVKCFVDLDAGF
VPTPSKTDLASQNLFSVALKNFGIKSKEKDNDVSMVIHREGKSLNYGQVEQSYQDWVRKM
HKSYDEEDALGEDEATVIFDSLDNKALCISPGCQAVRVHMVMKRKGKSWERGQRIRIMKG
ACAGVHKNDVYATIDYFLIENFEDETGGDARIVCRQINFSEEEGCILSTIKGISKLEIRK
SSSFPISIIDSEKCVLLDENEWNRKLVRQKEKDPSRIDLLDEKDCRTLNFNGETTIVQSV
CAGHTPPQQIVAVVRPASYTSPKLSKNLDQKHIVKMDGEMLMEVELQGGNIKSRDKNAKP
LYSDRCFPTILGGFHGLYVFKLESKFPHLFKKAGTYIFSFSVGNSITCKKKVIVKPSSKV
GSWKLVGNQETINVRVGSCLPPLSIICLDEYENQIPFTSVPSLEVKLKASLDFEVPVHKI
EANLIDDNGILKLKNMLVKTDGLDHIRPDYKATLEICSKDEPFSVSVACEVKPGPLKCVV
ENNPQALENLLPDSTVENYILEMFDGYNNHVEEGTTVSFCMNGFCIQDSMGLDLKVDSDG
CIDLSGILKVTAGYGKPVSLAVMSGKKEIFKKESQVEIRELRLLTELPEYCTAGTNLTNL
KFKVTDSYGIMDTSINNDEKSNSSHTLSIESTSRSVDSTVRYAFVHGSCKITSLSLPEPE
GVFSFKVFHSRHPELHMNLKIQLTSAQTSERDDIGSFEPYPRIYLTPQSKFGSTTNPWVT
PTQQTPSSQSQFRLLSIREMSSAISSQTA
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccggagatcgctcaagagagcactggttctagttgatgatgaagaagcagca
gctaagttttacaaactcaaggttcttttaccaaacggcactaacgtgacactcacactc
actaatccacaacatgaaatgtccatgaggaatttcgtcaatctggtgaaagaggagtat
gacaaaactcggaagagctatgtcttgtcaggaaagatgaggaaagggatcgattggaat
ttggctgctgaatcttatcttgacttcaacggtcaaaagattagaagagtggttcgactt
gagagttttgatcctgattcctgcaatatactacgtcttgatgatgggtctggtgaagct
cccactatgtatgagaatatgtgggatttgactcctgatactgatatgcttaaagaacta
cctgaaaattatagctttgagacagctcttgcggatcttatagataattctttgcaagct
gtgtggtcttgttcccctggaaacagaagactgattagtgtggatgttctcgaagatcgg
atttcagtctttgactctggtcctggaatggacagtagcaaggagaattctattgctaaa
tgggggaaaataggggcttcaatacataggtcctgcaaatccaaagctattggaggcaaa
ccaccataccttatgccattctttggaatgtttggatatggaggtgcatatgcgtgtatg
catttgggaaggcgtacgttggtgtcttcaaagacgaaacagtccaagaaagtattcacc
ctgcaactcaataaggaagcattgattgacaatcgttctatatccggaaagaactggaag
gtcgccggtggaatgagggatcctttggacgaggaaatgaagttatctcctcatggaagc
ttcacaaaggttgagatctttgaatcgaaatgtaagataccagatatatatcaacttcag
tgcagacttaaggatatttattttccttacatccagtgtgatgaagtctctaaaacggga
aggactctgagacctgttgggtttcaggtccatggagaggatttagctgagatagtaggt
ggagaggttgccaccaccaacctaaactccaagggtgaagagttttggtttcagattcga
ttctgcgtaaaaagcaaaggaacatcacaagaggcaaacgctcgtctcaagtttgtctat
tttccaatcgtccatgggaaagagagcattgatataatcatggaaagcttagagaaggaa
gggtacaaagtttctgaaagtttccaaacttttggtcgtgtttcagtaagaaggcttggc
cgtctgctcccagaagtcccttgggcatcaattccgttcatggaaagaggaaccatagcc
tctactcttcgaaaatgttgccaaagagtgaaatgttttgtcgatttggatgctggtttt
gtcccaacaccctcaaaaactgatcttgcaagccaaaacctattctctgtggctcttaaa
aactttggtattaaatcaaaggagaaggataacgatgtcagtatggtgattcatagggaa
ggaaaaagtttgaattacgggcaagtggagcagagttatcaggattgggttcgtaagatg
cataagtcatatgatgaagaagatgcattaggtgaagatgaagcaaccgttatatttgat
tctttggataataaagctctttgcatatctcctggttgtcaagctgtgagggtgcacatg
gtaatgaagagaaaagggaagtcatgggaacgtggacaaaggatcaggattatgaaagga
gcatgtgcaggagttcacaaaaacgatgtctatgcaaccattgactacttccttatagaa
aactttgaagatgaaaccggaggtgatgctcggattgtttgcaggcaaatcaatttctct
gaggaagagggatgcattctttcaaccattaaaggaatctcaaagctggaaattcgaaaa
tcatcatccttcccaatcagtataatagactctgaaaagtgtgtacttctagatgagaat
gaatggaacagaaaacttgtcaggcaaaaagaaaaggatccatcaagaattgatttgctg
gatgagaaagactgcagaacattgaacttcaatggtgaaacaactattgttcaatcagtg
tgtgctggacacactccaccgcaacagattgttgcagttgttcgacctgctagctacaca
tctccaaagctgtccaaaaatttggatcagaaacatattgtgaagatggatggagagatg
ctaatggaagtagaattacaaggcgggaatataaagtccagggataagaatgcaaaacct
ttgtattcagatagatgttttcctacaatccttggagggtttcacggtctttacgtcttc
aaacttgagtccaagttcccacacttgttcaagaaagctgggacttacattttcagtttc
tctgttgggaattcaattacttgtaaaaagaaggtgattgttaaaccatcttctaaggtg
gggagttggaaactggttggtaatcaggagaccattaatgttagggtgggatcgtgtctt
ccacctttatctatcatttgtttggatgagtatgagaatcagataccattcacttctgtt
ccaagtcttgaagttaaactgaaagccagcctagatttcgaagtcccggttcacaagatt
gaggccaacctgattgatgataatggaattctcaaactcaagaatatgctcgttaagact
gatgggttagatcacattagaccagactataaagcaaccttagagatatgctcaaaggat
gaaccattttctgtctcagttgcttgtgaagttaaacctgggcctttgaagtgcgttgtt
gagaacaatccacaggctttggaaaacttgcttccggattctactgttgaaaactatatc
ttggagatgttcgatggatataataatcatgttgaagaaggtaccactgtttcgttttgt
atgaatggcttttgtatccaagactcgatgggcttagacctaaaggttgatagtgatggc
tgcattgatctatctggaattctcaaagtcacagcaggctatgggaaacccgtatcactt
gctgttatgtctggcaagaaagagatcttcaagaaagagtctcaagttgagataagagag
ctcaggctgttaacagagctcccagagtactgtacagctggtacaaatctgacaaacctc
aagtttaaagtgacggattcatatgggattatggatactagtatcaacaatgacgaaaaa
tccaactcttcccacaccttgagcattgaatccacttcaagaagcgttgatagtacagtc
agatatgcctttgttcatggctcctgcaaaatcacttctctttccttacctgagcctgag
ggtgtcttctcttttaaggttttccattctaggcatccagagcttcatatgaacttaaag
attcagctaacatctgctcagacttctgagagagatgatattggtagttttgaaccttat
ccaaggatatatctaacgcctcaatcaaagtttggttcaactacaaatccatgggtgact
ccaactcaacagacaccatcctcacagtcacagtttagacttttgtccattagagaaatg
tcatcggctatcagtagccaaactgcc
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