Raphanus sativus (radish): 130508613
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Entry
130508613 CDS
T06014
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
130508613
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
130508613
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
130508613
NCBI-ProteinID:
XP_056860179
UniProt:
A0A6J0P2N1
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Position
1:complement(2443005..2447229)
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AA seq
782 aa
AA seq
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MEAIPPSNEVDNMEEDVDDEASSDGDSVDSEFQAEEEKEKELLPLIQFLPLPNPVPVPVD
DPAPAPVPVLPKGTKRKASREKGKLLWEIWEQEDQKLVDEHKTEDGDLDHLNNVITVTAE
PPPDLIMPLLRYQKEFLAWAIKQEQSVVAGGILADEMGMGKTIQAISLVLARREAARALF
REAVGCTLVICPLAALSHWSDEIERYTSPGSTKVLVYHGPKRDKNAEEFKKYDFVLTTYP
TVESEYRGCIVSLKEQCEYCNKWFYPAKLVNHKSYYCGPSAVETSKQSKQKKKKIPDAGK
KSILHSIKWNRIILDEAHIIKERHRNTAKAVFALKAFYRWALSGTPLQSNVGDLYSLIRF
LQIRPYSYYFCKDCDCRILDYTSHVSCSNCTHNAVRHFCWWNKNVAKIYGNVEREKRAMI
LLKHRVLKDIFLRRTKLGRTADLSLPPRVITLRRDALDIKESDYYESLYKDIKAQFNTYV
EAGTLMKNYTNVFVLLIRLRQAADHPYLVVYSQSRGADANLNDEHKMEHECGLCHQPAED
NVVTSCGHEFCKACLIDFSASLGSFSCPTCLELPTMDWTTDADTEQQAESKTTPKGFRAS
SILNLIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFISFLDLINYALGKCGVSC
VQLVGTMSKAARDIAINKFREDPDCKIFLMSLQAGGVALNLTVASHVFMMDPCWNPAVER
QAQDRIHRIGQYKPIRIVKFIIENTVEERILKLQKDKELLFDGSQGGIGTWTAEDIRFLF
TT
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgattcctccatccaacgaagttgacaacatggaggaagacgttgacgacgaa
gcttcttctgatggagattcagtcgactctgagtttcaagccgaggaggagaaggagaag
gagctccttcccctgatccagttcctgcccctgccaaatcctgtccctgtccctgttgat
gaccctgctcctgcacctgtgcctgtgctgccaaagggcactaaaagaaaagcctccaga
gagaaaggcaagctgttgtgggagatctgggaacaagaagatcagaaattggttgatgaa
cataagacagaggatggagatttggatcatctgaataatgtgatcactgtaactgccgag
ccgcctcctgatttgatcatgccactgttaaggtaccaaaaggagtttttagcgtgggcg
ataaaacaggaacagtcagttgttgcaggaggcattctcgcagatgagatggggatgggg
aaaaccatacaagccatctctcttgttcttgccagacgtgaagctgccagggctctgttt
agagaagcagtggggtgcacccttgtaatttgtccgcttgctgctctttctcactggtca
gatgagattgagcggtatacatcccccggtagcaccaaggtccttgtataccatgggcct
aagagagacaagaatgctgaagagttcaagaagtacgactttgtattgacaacttatcct
accgttgagagtgaatacaggggatgcatcgtgtcgctcaaggagcagtgtgaatattgc
aacaagtggttttatcctgcgaagcttgttaaccacaaaagttattattgtgggccttcg
gctgtggaaacgagtaaacaatctaagcaaaagaagaagaagatccctgacgcagggaag
aagtctattttgcactctattaagtggaatcggatcatcttggatgaggctcatatcatc
aaagaaagacataggaacactgcgaaagctgtttttgctttgaaggctttctatagatgg
gctttgagcggtacacctctccagagtaatgttggagatctttactccctgattcgcttc
ctgcagattcgtccatactcgtattacttttgcaaggactgtgactgtagaattcttgat
tacacttcgcatgtaagctgtagcaactgcactcataatgcagtccgacatttctgttgg
tggaacaaaaatgtggccaaaatttacggaaacgtggagcgggaaaagcgagccatgata
ttacttaagcacagagttctgaaagacatcttcctaagacgtactaaattgggccgtaca
gctgatctttcccttcctcctagagtcatcactctgaggcgggatgcactagatataaaa
gagtctgattactatgaatcactatacaaagacattaaagcgcaatttaatacgtacgtt
gaggctgggacattaatgaaaaactatacaaatgtatttgttcttctcattcgtctgaga
caggctgctgatcatccataccttgtggtgtattcacaatctcgtggtgctgatgctaac
ttgaatgatgagcacaaaatggagcacgaatgcggtctctgccaccaaccggctgaggac
aacgttgtgacttcttgtggacatgagttctgtaaagcttgtttgattgatttctctgca
tccctgggaagcttcagctgcccgacatgcttggaactaccgactatggattggactacc
gacgctgacacagagcaacaggcggaaagcaagacaacgccaaaaggatttagagcctca
agcatcttaaatctgataaagctcgatgattttcagacaagtacaaagatagaggctttg
agggaagaaatcagattcatggttgaaagagatgggtctgccaaagcaatagttttcagc
cagttcatatcctttttggatctgataaactacgcccttgggaagtgtggggttagttgc
gtccaactagtgggaacaatgtccaaggcagctagagatattgccatcaataaattcaga
gaagatccagattgcaaaattttcttgatgagtttgcaagcgggaggggttgctctcaac
ttaacagtcgcttcacatgtgttcatgatggatccgtgctggaacccagcggttgagagg
caagcacaggacaggatacataggatcggacagtacaagccaatcaggattgtgaaattc
ataatagagaacacagtggaggaaaggattctgaagcttcaaaaggacaaggaacttttg
tttgatggttctcaggggggcataggaacttggacagcagaagatattaggtttctgttt
accacctaa
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