Raphanus sativus (radish): 130508993
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Entry
130508993 CDS
T06014
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130508993
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130508993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
130508993
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
130508993
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Vinculin
Motif
Other DBs
NCBI-GeneID:
130508993
NCBI-ProteinID:
XP_056860486
UniProt:
A0A9W3D9T0
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Position
1:complement(2765865..2768900)
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AA seq
537 aa
AA seq
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MLRGSHFISSPPTSIPSVSSTPLFSQDQVTMPLFELFRLTNTKLESAQDNNPSPPVDEVV
ELVWENGQISTQSQSSRSRNIPPPRQESSSRARETINGSKTTMVEEIPMSVPSLMTGLSQ
DDDLVPWLNPHHQSLDGYCSDFLHDVSPVAVDEQESEDAFPLFQRRDNGNESAPPADSTS
LQFNGFQSHSLYGSGRARDPPVSQPAKPDPSTSNKPGLINFSHFLRTAALAKTNDSPPGS
KEKSPQSPPNVFQTRVLGAKEVLNESVMPNKDNQKACLVSEDSNRKDQESEKAVVCSSVG
SGNSPSESPLKRKHPPDVQDIECHSHSEDVEGESGDGKKEAAPSRTGMGSKRSRSAEVHN
LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQFMSMASGYYMPP
VMFPPGMGHHYQAAAMAMGMGMPYAMGLPDINRGGPSVNNAPQFQFPGMQQPVTMALPRV
SAGGFFGSSTVEMNKSDDGSTRDLPGTNDQTTTKSNNGLKPIKRKQASPPDQFCGSS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgaggatctcactttatatcttccccaccgacttcgattccttcagtttccagt
acccctctgttttctcaggatcaagtcaccatgcctctgtttgagcttttcaggctcacc
aatacaaaacttgaatctgctcaagacaataacccttcaccacctgtggatgaagttgtt
gagctggtttgggaaaacggtcagatttcaactcaaagccagtcaagcagatcgaggaac
attccaccaccacgacaagaaagctcttcgagagctagagagaccataaacggctcaaag
acgacgatggtggaggagatcccaatgtcagtgccctcactaatgacgggtttgagtcaa
gacgatgacttggttccgtggctgaatcctcatcatcaatccctagatggatactgctct
gatttcttgcatgatgtttctcctgttgctgtcgatgagcaagagagcgaagatgctttc
ccgttgtttcagaggagagacaatggcaatgagtcagctccccctgctgattctacttca
ttacagttcaacggtttccaatcacattctctgtatggaagcggtagagctagagatcct
cctgttagccaaccagcaaaaccggatccatcaactagtaacaagcctggtttgatcaac
ttctcgcatttcttacgcactgcagctttggctaagaccaatgactctcctcctggctct
aaagagaagagtcctcaaagccctccgaatgtgtttcagaccagagttcttggagctaaa
gaggttctcaacgagtctgttatgcctaataaggataaccaaaaggcttgcctagtttcg
gaagactcaaatagaaaagaccaagagagtgaaaaggcagttgtatgttcttctgttggc
tcgggtaatagtccatctgaaagtcctttaaaaagaaagcatcctcctgatgttcaagac
attgaatgtcatagtcatagtgaagatgttgaaggagaatcaggagatggaaaaaaagaa
gcagctccatctcgaaccggcatgggttcaaagagaagccgctcggctgaagtacataat
ctgtctgaaaggagacggcgtgataggattaacgagaagatgcgtgctcttcaagaactc
ataccaaactgcaacaaggtggataaagcttcgatgctagatgaagcaatcgagtatctc
aagtcacttcaacttcaagtacagttcatgtcaatggcgtctggttactacatgccaccg
gttatgttcccaccgggtatggggcatcattaccaggcagcagcaatggcaatgggtatg
ggaatgccttatgcaatgggcttgccagatatcaaccgtggcggtccctccgttaacaac
gcaccacagttccagttccccgggatgcaacaacctgtgaccatggcgcttccacgtgtc
tctgctggtggtttctttggttcttcaacggtggagatgaataagagtgatgatggttcg
actagagatctaccaggtactaacgatcaaacgacgacaaagagtaacaatggcctgaaa
ccaattaagagaaaacaagcgtctcctcctgatcagttttgtggatcgtcgtaa
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