Rathayibacter toxicus WAC3373: APU90_08600
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Entry
APU90_08600 CDS
T04269
Symbol
kgd
Name
(GenBank) alpha-ketoglutarate decarboxylase
KO
K01616
multifunctional 2-oxoglutarate metabolism enzyme [EC:
2.2.1.5
4.1.1.71
1.2.4.2
2.3.1.61
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc00020
Citrate cycle (TCA cycle)
rtc00630
Glyoxylate and dicarboxylate metabolism
rtc00785
Lipoic acid metabolism
rtc01100
Metabolic pathways
rtc01110
Biosynthesis of secondary metabolites
rtc01120
Microbial metabolism in diverse environments
rtc01200
Carbon metabolism
rtc01210
2-Oxocarboxylic acid metabolism
Module
rtc_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rtc_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
APU90_08600 (kgd)
00630 Glyoxylate and dicarboxylate metabolism
APU90_08600 (kgd)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
APU90_08600 (kgd)
Enzymes [BR:
rtc01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
APU90_08600 (kgd)
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.5 2-hydroxy-3-oxoadipate synthase
APU90_08600 (kgd)
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase
APU90_08600 (kgd)
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.71 2-oxoglutarate decarboxylase
APU90_08600 (kgd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
E1_dh
2-oxoacid_dh
Transket_pyr
OxoGdeHyase_C
2-oxogl_dehyd_N
Motif
Other DBs
NCBI-ProteinID:
ALS58344
UniProt:
A0A0C5BH33
LinkDB
All DBs
Position
complement(1882638..1886354)
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AA seq
1238 aa
AA seq
DB search
MTDAGAGQGAEDFGANEWLVEDLYEQYKSDKSSVDESWWPILERYGAQIARKSDSTTAAP
TTNRVPTTADGGATAPPAASSSGVPAARTTSKQPKPQPIPADAPVSAPTQHEESAAAADV
TTPLRGMAKSLATNMDASLSIPTATSVRTIPAKLMIDNRIVINNHLHRTRGGKVSFTHLI
GWALIRALAKFPSQNVYYDESDGKPCVVAPAHVGLGIAIDMPKPDGTRALLVPCIKRADT
LSFTAYLAAYEDLVKRARGNKLVAGDFAGTTLSLTNPGGIGTVHSVPRLMKGQGCIIGAG
ALDYPAEFQGASEKTIVELGISKTITLTSTYDHRVIQGAGSGEFLKIVHELLIGGDNFYE
EIFAALRIPYNPIRWLTDIAVDLAERVSKTARVQELINSFRVRGHLMADVDPLEYVQRSH
PDLAIESHGLTFWDLDREFVTNGFGGKRQLKLREILGILRDSYCRTVGVEYMHIQDPQQR
AWLQAKLERGYKKPGHDEQLRILGKLNEAEAFETFLQTKYVGQKRFSLEGGESLIALLDA
VLQGAADAQLDEVAIGMAHRGRLNVLTNIAGKTYGQIFREFEGTQDPRTVQGSGDVKYHL
GTEGTFRGADGAEIPVYLAANPSHLEAVNGVLEGIARAKQDRKPIGTFTTLPILVHGDAA
MAGQGVVVETLQMSQLRAYRNGGTIHININNQVGFTTPPSEGRTSIYSTDAAKTIQAPVF
HVNGDDPEAVVHVAQLAFEYRQHFHRDVVIDLICYRRRGHNEGDDPSMTQPLMYSLIEAK
RSVRKLYTEALVGRGDITEEEYDRAHQDFQERLERAFAETHAAQTGAIPVISTDSSVADL
ELPDAQQPDGYRGEPAVTGVTKEVIARIGDAFTSPPQGFTVHPKLQQLLAKRYEMSRSGS
IDWAFGELLAIGSLLLENTPVRLVGQDTRRGTFVQRHAVLHDRENGQEWLPLMNLSEQQA
RLWIYDSLLSEYAAMAFEYGYSVERPDALVLWEAQFGDFANGAQVVIDEFISSAEQKWGQ
RSSLVLLLPHGYEGQGPDHSSARIERYLQLCAERNMTVARPSTPASYFHLLRRQAYSRPR
RPLIVFTPKAMLRLRGASSSVEDFTTGRFEPVLDDHRVRDASAVTRVLLHAGKVHYDLAA
EREKKPDDTIALVRLEQFYPAPMHELHAIAERYPRAELVWVQDEPENQGAWPFIALEVAP
QLGRPIRVASRPAAASPAAGSAKRHAYEQAQLMARAFE
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcgggcgcaggccagggagcagaggacttcggagccaacgagtggcttgta
gaggatctgtacgagcagtacaaatccgacaagtcgtcagtcgatgagtcctggtggccg
attttggaacgctacggggcccagatcgcgcggaagtcagactcgaccaccgctgctccc
acgaccaaccgcgtcccgaccaccgcggacggcggcgcaactgctccccccgccgcatct
tcctcgggggttccggccgcgcggacgacgtccaagcagcctaagccgcaacccatcccg
gccgatgcccccgtcagcgcacccacccaacacgaggaatctgcggcggcagcagatgtc
accaccccgctgcgcggcatggccaagagcctcgccaccaatatggatgcgagcctgagc
atcccgacagccacgagcgttcgcacgatcccagcgaagctgatgatcgataaccgcatc
gtgatcaataaccatttgcaccgcacccgcgggggtaaggtctcttttacacacctgatc
ggctgggcacttatccgtgccctcgcgaagtttcccagtcagaacgtttattacgacgag
agtgatggcaagccttgcgtcgttgccccggcgcatgtcggtctgggcattgcgatcgat
atgccgaagccggacggcacccgagccctccttgtgccatgcattaaacgcgcagacact
ctgagttttacggcttatctcgccgcatacgaagatctagtcaagcgagcccggggcaac
aagcttgttgcgggcgactttgccggtaccaccctctcgttgacaaacccgggcggtata
ggcacggtccattcggtgccgcgcttgatgaaaggtcagggttgcatcatcggcgcaggc
gcccttgactatcccgcagaattccagggtgcatccgaaaagacaattgtcgaactcggc
attagcaagaccatcactctcacctcaacatacgaccatcgtgttattcagggcgcaggc
tcgggcgaattcctcaaaatcgtgcacgaactgttgatcggcggggacaacttctatgaa
gaaatcttcgcggcgctgcgtatcccctataatccgatccgctggttaacagacattgct
gttgacctggccgagcgggtgtcaaagaccgcccgggtgcaagaactgatcaactctttc
cgggtacgcggtcacctgatggccgacgtcgacccgctcgagtacgtgcagcgctcacac
cctgatttggcgatcgaaagtcacggcttgacgttttgggatctggaccgtgagtttgtc
accaacggtttcggtggtaagcgtcaactgaaactgcgcgagattctgggtattctgcgc
gactcctactgtcgtaccgttggcgtcgaatacatgcatattcaagatccgcagcaacgc
gcgtggttacaggccaagctggaacgcggctacaagaaaccggggcatgacgaacagctg
cggattctcggcaagctcaacgaagccgaggcgtttgagacattcctgcaaaccaagtat
gtcggccaaaaacgtttctcgcttgaaggcggagaatccctcatcgcactcctggatgcg
gtgctgcagggcgcggccgatgcgcagctcgatgaggtggccatcggtatggctcaccgc
ggtcgactcaatgtgctcaccaatatcgccggcaagacctacggccaaatcttccgtgaa
tttgagggcacccaggatccgcgcacggtccagggctcaggagacgtcaaataccacctc
ggtacagaaggaaccttccgtggtgcagacggagcagaaattccggtctatctcgcagcc
aacccctcgcatctcgaagccgtgaatggggtactcgaaggcatcgcccgcgcaaagcaa
gaccgtaaaccaatcggtacctttacgactctcccgattctcgtccacggggatgcggct
atggcggggcagggagtagtcgtcgagacgctacagatgtcccagttgcgcgcttaccgt
aacggcggcacgatccacatcaacatcaacaaccaggtcggtttcaccacaccaccgagt
gaaggccgtacctcgatctattccaccgacgcggccaagaccatccaggcaccggttttc
catgtcaatggcgatgatccagaggccgtggtccatgtagcgcaactcgcgttcgaatac
cgacagcatttccaccgcgacgtggtcatcgatctgatctgctatcgccgtcgcgggcac
aacgagggggacgacccctcgatgacgcagccgttgatgtacagcctgatcgaggccaaa
cgctcagtgcgcaagctttacaccgaggcgctcgtcggtcgcggcgacatcaccgaggaa
gagtacgaccgggcgcaccaagacttccaggagcgcctggagcgggctttcgccgagacg
catgccgcgcagactggcgcgatcccggtgatcagcacggacagctccgtggccgacctg
gaactgccggacgcccagcagcccgacggctaccggggcgaaccggcggtcacgggagtc
acgaaggaggtgatcgcccgtatcggtgatgccttcacatcgccaccccagggctttacc
gtgcatcccaaactgcaacagttgctcgctaaacgctacgagatgagccgctccggctcg
atcgactgggcgttcggcgaactgctggccatcggctcgctcctgctcgagaacactccc
gtacgccttgtcggccaagacacccggcgcgggacctttgtccaacgtcacgccgtgttg
cacgaccgcgaaaacgggcaggaatggttgccgctgatgaacctctccgagcagcaggca
cgattgtggatctatgactcgctgctgtcggaatatgcagcgatggcattcgaatacggc
tattccgttgagcgtcccgatgcgcttgtgctgtgggaggcgcaattcggcgacttcgcc
aatggcgcacaggtcgtgatcgacgaattcatttcgtcggccgagcagaaatggggccag
cgctcctcacttgtcctcctgctcccccacggctatgaggggcaggggccggaccattct
tcagcccgaatagagcgctacctgcaactgtgcgcggagcgcaacatgacagtggcccgt
ccctcaacgcccgcgtcgtacttccatctcctgcgccgccaggcgtattcccggccccgc
cgcccgctgatcgtcttcacgccaaaggcgatgctgcggctgcgtggagcgtcaagttcg
gtcgaggacttcaccacgggccgattcgaaccggtgctcgacgaccaccgcgtccgggat
gcgtcggcggtgacgcgtgtgcttttgcacgccggcaaggtgcactacgacctcgccgcc
gaacgcgaaaagaaaccagacgacactattgctctggtgcgcctggagcagttctacccg
gctccgatgcacgaactgcacgccatcgcggaacgttacccccgtgcggaactggtctgg
gtgcaggatgagccagagaaccagggcgcgtggcccttcatcgcgctggaggtggctcca
cagctcggccgtccgatccgcgtggcgtcccgaccggccgcagcgtcgccggccgcgggt
tcggccaagcgtcacgcgtacgagcaggctcagctcatggcacgcgcgttcgagtag
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