Rissa tridactyla (black-legged kittiwake): 128902314
Help
Entry
128902314 CDS
T09443
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04622
RIG-I-like receptor signaling pathway
rtd04623
Cytosolic DNA-sensing pathway
rtd05164
Influenza A
rtd05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128902314 (RIGI)
04623 Cytosolic DNA-sensing pathway
128902314 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128902314 (RIGI)
05168 Herpes simplex virus 1 infection
128902314 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rtd04054
]
128902314 (RIGI)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128902314 (RIGI)
Pattern recognition receptors [BR:
rtd04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128902314 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
128902314
NCBI-ProteinID:
XP_054041051
LinkDB
All DBs
Position
Z:complement(17378236..17403665)
Genome browser
AA seq
928 aa
AA seq
DB search
MTAEEKRSLQCYRRYIERSLNPVYILSNMTEWLSDEVKERVRKEEEKGVTAAAALFLDAI
LQLEVEGWLRGFIDALVAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEIDPVA
LMPYINTCLIERECDEILQISEYRSKTAGITKLIECLCRSDKENWPKSLQLALDNTGYYN
ASELWDMREDNGKDVDGEITDASENTFETTMTFFEKAECDNNLSENLCSALEGVDQPSPV
YEPKKARSYQIELAQPAINGKNTVICAPTGSGKTFVAVMICEHHFQNMPAGRKAKVVFLA
TKVPVYEQQKNVFKQHFERSGYSVQGISGETVANVSVEKIIQDSDIIVLTPQILVNSIEE
GILSSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFDSSAKQLPQIVGLTASVGVGNA
KTVKETIEHICTLCSYLDIQAISTVRENKQDLQRFRNTPETHVRWVKMRVQNHFADVISG
LMSETEMLMRKIYSVDTVSQINKNDFGTQKYEHWIVATQKKCKLLQLADKEKESSICRDL
FICTEHLRKFNDALIISEDARIEDALAYLTEFFTNVKNGPYTELEKQLTAKFQEKEPELT
ALSKDESNENPKLEELACILDDAYRYNPQTRTLLFAKTRALVAALKKWVEANPLLSYIKP
DVLMGRGRRDQKTSMTLPMQKGILDAFKTNKDSRLLIATSVADEGIDISECNLVVLYEYF
GNVTKMIQVRGRGRARDSKCILVTSKTEVVENEKHNRYKEEMMNEAIEKLQNWDETTFAR
KIHDLQMKEKVLRDSRKKETRPKVVEGKKNLLCGKCKAYACSTDDIRIIKESHHTVLGEA
FKERYITKPHHKAIQFDCFEKKSKMHCQNTSCQHDWGITVKYKTFDNLPVIKIKSFVVED
AETGTLMDFQKWKNINFSLKNFDEEMSS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcggaggagaagaggagcctgcagtgctaccggcggtacatcgagaggagcctg
aaccccgtctacatcctgagcaacatgacggagtggctgtccgacgaggtgaaggagaga
gtgcggaaggaagaggagaagggggtgacggcggccgccgcgctgtttctggatgccatc
ctgcagctggaagtggagggatggctccggggcttcatcgacgccctggtcgcagcaggt
tacaccggactggcagaagcaattgaaaactgggacttcagcaaactggaaaagttggag
ctgcacagacagctgttgaagcggatagaagcaacgatgctcgaaattgatccggtagca
ctcatgccttacataaacacgtgcctgatagaaagggagtgtgatgagatcttgcagatt
agcgaatacagaagcaaaacagctgggataactaaactcattgaatgtctctgtcgatcg
gataaggaaaactggccgaaaagccttcaactggcactagataacacaggatattacaat
gcaagtgaactatgggatatgagagaagataacggcaaagatgttgacggtgaaatcaca
gatgcctctgaaaacacctttgaaaccactatgacattctttgaaaaagcagaatgtgat
aataatctcagtgaaaatctctgttcagctttagaaggggttgatcagccttcgcctgtt
tatgaaccaaagaaggctcggagctatcagattgaactcgcgcagcctgctatcaatggg
aaaaacacagtgatatgtgcccccacgggatctggaaaaacttttgtggcagttatgatt
tgtgaacaccatttccaaaatatgcctgcaggacgaaaggcgaaagttgtctttcttgca
actaaagtgccagtgtatgaacaacagaaaaatgtattcaaacagcattttgaaagaagt
ggatattctgttcaaggaattagtggtgaaacagttgcaaatgtctctgtagaaaagatt
atacaggacagtgacatcattgtgctgacgccccagattcttgtgaatagcattgaggaa
gggatccttagctccctctccatcttcactctgatgatatttgatgagtgccacaacact
acaggcaaccacccttacaatgtgttaatgaccagatacctggaacaaaaatttgactcc
tctgcaaagcagctgcctcagattgtaggtttaactgcttctgttggagttggtaatgcc
aagaccgtcaaggaaacgatcgagcacatctgtaccctctgctcctaccttgacatacag
gccatatccactgtcagagagaacaaacaggatctgcagagattcagaaacactccagaa
acacatgtcagatgggttaaaatgcgagttcagaatcactttgcagacgttatctcaggt
ctgatgtctgagacagaaatgttgatgaggaagatttactccgtagatactgtctcccaa
atcaacaagaatgattttggaacacagaaatatgaacactggatagttgcaactcagaag
aaatgcaaactgttgcaactggcagacaaggagaaggagagcagcatttgtagagacctt
ttcatttgcaccgaacacctgcggaaattcaatgatgctctcatcatcagtgaagatgcc
cgcatcgaagacgctttagcctacctcactgaatttttcacaaatgtcaaaaacggaccc
tatacggagttagagaagcaactgacagccaaatttcaagagaaagaaccagaactgact
gccctttcaaaagatgaatcaaatgagaatcccaagctggaagagcttgcttgcatcctg
gatgacgcataccgctacaacccacagactcgcactcttctctttgctaagacaagagcc
ttagtagctgctttgaagaagtgggtagaagcaaaccctctacttagctacataaaacca
gatgtgttgatgggtcgtggaagaagagatcaaaaaacaagtatgaccctcccaatgcag
aaggggatactggatgccttcaaaaccaacaaagacagcagactgctaattgctacgtca
gttgctgacgaaggcattgatatttctgaatgcaaccttgttgtgctctatgaatacttc
ggtaatgtcaccaaaatgatccaagtcagaggtcgtggaagggcaagagacagcaagtgc
atccttgtgacaagcaaaacagaagtggttgagaatgagaaacacaaccgttataaggaa
gaaatgatgaatgaagctattgagaagctacagaattgggatgaaacaacatttgcaaga
aagatacatgacctgcaaatgaaggaaaaggtattacgagattccaggaagaaagaaaca
agacctaaggtagtggaagggaaaaaaaatcttctgtgtggaaaatgcaaagcgtatgcc
tgcagtacagatgacatcagaattataaaggaatcgcatcacactgtcctaggagaggca
ttcaaggagcgctacataacaaagcctcaccataaagcaatccagtttgattgttttgag
aaaaaaagcaagatgcattgccaaaatactagttgccagcatgactggggaatcactgtg
aagtacaagacatttgataatctaccagtgatcaaaattaaaagctttgtagtagaggac
gctgaaactgggacactaatggattttcagaaatggaaaaatattaatttttctttgaag
aattttgatgaagaaatgtccagctga
DBGET
integrated database retrieval system
