Rissa tridactyla (black-legged kittiwake): 128906359
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Entry
128906359 CDS
T09443
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128906359 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128906359 (LIG4)
Enzymes [BR:
rtd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128906359 (LIG4)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128906359 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
128906359
NCBI-ProteinID:
XP_054049463
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All DBs
Position
1:complement(65734703..65738965)
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AA seq
931 aa
AA seq
DB search
MRRRGHCDFRPHRPRFRTLMASAPASQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKT
KYFKDFLDSWRKFHDALHQKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIEL
LNLPKDGKDAAKLLNYRTPAGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIA
SNNTAKNKGMLKKSLLQLITQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHN
VTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDG
ERMQMHKDGDVYKYFSRNGFDYTQQFGASPLDGSLTPFIHNVFKNNIQNCILDGEMMAYN
PETQTFMQKGNKFDIKRMVEDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPV
AGRIHVVQKKSARRRKEVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVN
GLMDELDLLIVGGYWGKGSRGGMMSHFLCAIAETPPPNEKPTVFHTICRVGSGYTMKELY
DLGLKLAKHWKPYNRKDPPCNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTL
RFPRIEKIREDKEWYECMTSVMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTISKVKR
IIGIAEQFKAPDLSTVNKVSNVFEDVEFCVMTGMGKYSKSYLESRIAECGGSVVQNPGPE
TYCVIVGAENVRVKNIIASNKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAR
EYDCYGDSYTADTDVAQLKEVFSRMEDSKLVPLDVIAELEERYSWNSCQLSIFRGNTIYV
DCYTVVNEPRTKIHGTTLSIRALELRFYGAKVVSHLEEGVSHVIVGEDHSRVKEIKALRR
TFGKKFKIVSELWVKQSVEEGVPKDENQYLV
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaggcgcggtcactgtgacttccgcccccacagaccccgcttccgtactctgatg
gcttccgcaccggcttcacaaccttctccaaaaaagacagtggcctctcacgtgcccttt
gcggatctgtgttctactctggagcgaatccagacgtgtaagtctcgtccggagaaaacc
aagtatttcaaggatttcctggattcctggagaaaattccatgatgcgcttcatcagaaa
gagaaagacgtcacggattctttttatccagctatgcgacttattcttccacagctggaa
agagaaaggatggcatatggaattaaagaaactatgcttgcaaagctgtatattgaactg
cttaatttgccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacctgct
ggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacctagg
agcccaaaacaaggcagactgacaatagaacaagtcaacgaacacttagatgcaatagct
agtaataatactgcaaaaaacaagggaatgttaaagaaaagtcttcttcagttaattacc
cagagcacagcactggaacaaaagtggctcatccgcatgattataaaggatctaaagctt
ggtgttagtcaacaaacgatattttccatttttcatcctgatgctgctgaattacacaat
gtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcacttagt
gatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgctgatgtc
cagcaaattgagaagcaaatgaataaccaggtattctacatagaaactaagctggatggt
gagcgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgaaatgggttt
gactatactcagcagtttggtgcttccccccttgatggttcattaacgccatttattcat
aacgtatttaagaacaatatacaaaactgcattcttgatggtgaaatgatggcttacaat
cctgagactcaaacctttatgcaaaaaggaaacaaatttgacataaaaagaatggtggag
gactctgatctgcagacctgcttctgtgtgttcgatgtattgatggttaacgatcagaag
ttgggtcatgaagtactaagcaaaagatatgaaatcttaagtagcgtatttaccccagta
gcaggcaggatccatgttgtacagaaaaaaagtgccagaagaagaaaagaagtaattgat
gctttaaatgaagcaatagataacagagaagaagggattatggtgaaagatcccatgtcc
acctacaagcctgacaaacgaggggaaggctggttaaaaatcaagccagaatatgtcaat
gggctaatggatgaactagaccttttaattgttggcggttactgggggaagggctcacgt
ggtggaatgatgtctcattttctgtgtgcgattgcagagacgccccctccaaatgaaaaa
cctaccgttttccacactatttgtcgtgttggctctggctatactatgaaggaattgtat
gatctaggtttgaaactggctaaacactggaagccatacaataggaaggaccctccctgt
aacattttgtgtggaactgaaaaaccagaaatgtacattgaaccttgcaactctgtcata
gtccagatcaaggcagccgagattgttaacagtgatatgtacaaaactgactgtactttg
agattcccccgaattgagaagataagagaggacaaagagtggtacgagtgcatgacttca
gtcatgttagaagatctccgaagcaaagcagaagggaagctggcatctaagcaccttcat
atagatgagtatgatgagccacaagagaaaaaaaggaaaactatatcaaaggtgaagagg
ataattggaatagctgagcagtttaaagctcctgatctttctactgtaaacaaggtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaagtcg
tacctggaaagcagaatagccgaatgtggtggcagcgtggtacagaacccggggccggag
acttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttccaac
aaatacgatgtggtgagggcagagtggctccttcagtgttttcaaacgaaaatgctggtg
ccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaaggaa
gtgttctcaagaatggaagacagtaagttggtacctttggatgtgattgcagagttagaa
gaacgttattcatggaacagctgtcagctcagtatattcagaggaaacactatttatgtg
gactgttacactgttgttaatgagcccagaaccaaaatccatggaacaacactatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggtgtc
tcccatgttattgtaggagaagatcattcccgggtaaaagagattaaagcactcaggaga
acatttgggaaaaaatttaaaatcgtatctgagctgtgggtaaaacaatcagtggaggaa
ggagtcccgaaggatgaaaatcagtacttagtttaa
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