Rissa tridactyla (black-legged kittiwake): 128908737
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Entry
128908737 CDS
T09443
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04010
MAPK signaling pathway
rtd04120
Ubiquitin mediated proteolysis
rtd04140
Autophagy - animal
rtd04144
Endocytosis
rtd04620
Toll-like receptor signaling pathway
rtd04621
NOD-like receptor signaling pathway
rtd04622
RIG-I-like receptor signaling pathway
rtd05132
Salmonella infection
rtd05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128908737 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128908737 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128908737 (TRAF6)
04140 Autophagy - animal
128908737 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128908737 (TRAF6)
04621 NOD-like receptor signaling pathway
128908737 (TRAF6)
04622 RIG-I-like receptor signaling pathway
128908737 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128908737 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
128908737 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtd04131
]
128908737 (TRAF6)
04121 Ubiquitin system [BR:
rtd04121
]
128908737 (TRAF6)
Enzymes [BR:
rtd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128908737 (TRAF6)
Membrane trafficking [BR:
rtd04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
128908737 (TRAF6)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128908737 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
Sina_ZnF
SlyX
PspA_IM30
Med21
RING_XB3-XBAT31
TRAF3_RING
zf-RING_11
DUF4455
CENP-F_leu_zip
HAP1_N
CEP104_ZnF
U-box
UPF0242
Spc29
DUF1664
DUF16
PUMA_CC
HMMR_N
ADIP
DM
Motif
Other DBs
NCBI-GeneID:
128908737
NCBI-ProteinID:
XP_054055483
LinkDB
All DBs
Position
4:51655367..51678922
Genome browser
AA seq
545 aa
AA seq
DB search
MSLLYSNNGCGARDVESGCCAAMASACSVGAKEDSVSVSSGTGNPPSSFTEETQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTVECPQCQGAFQKNHLKEHVTQ
ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV
PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL
FSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL
EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL
PNAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL
AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQSRS
TDGAM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagcttactatatagtaataacggttgtggagcccgagacgtggaaagcggctgctgt
gcagccatggccagtgcctgcagcgttggagcaaaagaagacagcgtaagcgtcagcagt
gggacgggaaaccctccaagctctttcacagaggaaacacaaggatatgatgtggagttt
gatccgcccttggaaagtaaatatgaatgcccaatctgtttgatggctcttcgggaagca
gtgcagacaccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat
gcaggtcacaaatgtccagtagacaacgaaattctactcgaaaatcaactttttcctgac
aacttcgctaaacgggaaatcctttcattaatggttaagtgtcccaacaagggctgcagt
atgaagatggagctgaggcatttagaggaccaccagttgcagtgtgatttttccactgtg
gagtgcccacagtgccagggagccttccagaagaaccatctgaaagaacacgtgacacag
gagtgtccgaggcgtcaagtctgttgtccaaactgtgccacatctatggcctatgaagat
aaagagcttcatgaccaaacctgtccactcgccaatgtattttgtgaatattgcaacacg
gtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccagta
ccatgtttttacagtgcgtttgggtgtcctgaaaagatgcaaaggaatgaactggcacga
catatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc
agtgttactgctacaaatcctgtacccttcatcaatggcctaccctttgagcctgccctt
ttctcacatgtgtcacatgccgcgtatgattgtaatccagaagttgaaaacttcaaagaa
actattcagcagttggaaggtcgtctggtaagacaagatcatcaaatcagagaactcatt
gctaaaatggagactcagaacactcacatggcagaactcaaacgtactatccgaaatttg
gagggaaagataactgaaatggaggcacagcaatgtaatggtatttatatctggaagatt
gagaacttcagtggacttcagaaagctcaggaagaagagagacctgttgtaatgcacagt
cctggcttctatactggaaagcctggctacaagctgtgtttgcgcctgcatatccaatta
ccaaatgctcagcgttgtgctaattatatctctctgtttgtccacactatgcaaggagaa
tatgacagccatctgccttggcctttccaaggcaccatacgactttctattttggatcaa
tcagaaggccctgaaaggcagaatcatgaagaagtaatggaagccaagccagagttacta
gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg
cacctgcaaaccttgaaacaaagaacctttgtaaaggatgatacccttctagtgcgctgt
gaagttctaactcgtctagatttaaacagtcttcgcagagaaggatttcagtctcgcagt
actgatggagctatgtag
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integrated database retrieval system
