Rissa tridactyla (black-legged kittiwake): 128919301
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Entry
128919301 CDS
T09443
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtd04040
]
128919301 (SCN4A)
Ion channels [BR:
rtd04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128919301 (SCN4A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
128919301
NCBI-ProteinID:
XP_054080502
LinkDB
All DBs
Position
19:complement(3216216..3265658)
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AA seq
1840 aa
AA seq
DB search
MAGLPHIPGPENLRPFTPASLAAIEQRIAEAEALKLKRQQVELPEEEEIKPSSDLEAGKN
LPLIYGDPPPELIGTPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYMLGPFHPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTLSNPPAWSKNVEYTFTGIYTFESLIKILSRGFCI
DDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPLNDTLLGDLGLDNDTLAN
ETLYSNFTDGIASNFTSNFTSNSTFDFEAYINDEANFYFLEGALDALLCGNSSDAGKCPE
GYQCMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVI
FLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKHQEEQERMLQERRS
SSSSLPSSVAEKERDSDLNSDQDKAKDCNGQVVPKVVLERSATVIDFNPTPEPEKSDHNH
LTVGNQDGPGLEKRVGSAISVISNAVEELEEAHQKCPPWWYKFAHTFLVWNCCPPWVKLK
EFVKMVVMDPFVDLGITICIVLNTVFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEMVLK
LIALDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNM
LIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISLDCTLPRWHMNDFF
HSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSAD
SLAASDDDGEMNNLQIAIGRITKGIDFVKASLLMLLRRLWKGKKVAPEEEQEHSKKDNSV
LNHVDAGQDLKLEYLDGVAGKEHFFMDELDHMNFINNPNLTVQVPIASEESDLYEETSTQ
SDTEDIKKPLPGDNASSLCSTVDYKPPQPEEEEVAEEAEDSNEPEECFTEACVKRFPCLY
VDVTSDRGKVWWNLRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRTILE
YADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTANWLGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKY
YRCVNTTTGELFDISVVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGW
MDIMYAAVDSREIEEQPVYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFG
GKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKFQGMVFDFVTKQVFDITIMILICLN
MVTMMVETDDQSELKTSVLYKINLVFIVIFTGECVLKMFALRYYYFTIGWNIFDFVVVIL
SILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYSIFGMSNFAYVKKEAGIDDIFNFETFGNSIICLFQITTSAGWDGLLSPIL
NSGPPDCDPDLENPGSSVKGDCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATE
ESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDL
PMVAGDKIHCLDILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPITTTLKRKH
EEVCATKIQRAFRRYLLRRSVKQASYMYRHSKDEEALKEDAPEKEGLIATKMHEMYGHGG
TDVETAPAFDLAPVPSSETRDAPGEAEAWDKEWVVKESLV
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctgccgcacatcccgggccctgagaacctccgccccttcacccctgcctcg
ctggctgccatcgagcagcgcatcgccgaggcagaggcactcaagctaaagcggcagcaa
gttgagctgcccgaggaagaggagatcaagcccagcagcgacctggaagctggcaagaac
ctgcccctcatctatggtgacccaccgccggagctcatagggactcctctggaggacctg
gaccctttctacaaggataagaagacattcatagtcctcaacaaagggaagtccatcttc
cgcttctcggcaacccctgccctctacatgctggggcccttccaccccatccgcagagga
gccatcaaagtgcttatccattcattattcagcatgttcatcatgatcacgattttaacc
aactgcgtgtttatgacgctgagcaaccccccggcgtggtccaagaacgtggaatacacc
ttcactgggatatacaccttcgagtccctcatcaagatactgtcgagaggcttctgcatc
gacgacttcacattcctgcgtgacccgtggaattggctggacttcatggtcatctccatg
gcctacattaccgagttcgtggacctggggaacatctctgctctcaggaccttccgtgtc
ctccgtgccttgaaaaccatcaccgtgataccaggactgaagacgattgttggggctctg
atccagtcggtgaagaagctctcggacgtcatgatcctcaccgtcttctgcctgagcgtg
ttcgccctcgttggtctccagctcttcatggggaacctccggcagaagtgcgtgcggtgg
ccccccctcaatgacaccctgctgggggacttagggctggacaacgacacgttggccaat
gaaacgctctacagcaacttcaccgacggcatcgccagcaacttcaccagcaacttcacc
agcaacagcaccttcgatttcgaggcctacatcaacgatgaagccaatttctactttctg
gagggagcgctcgatgccctgctctgcgggaacagcagtgacgctgggaagtgccctgaa
gggtaccagtgcatgaaggcggggaggaacccgaactacggctacaccagctacgacacc
ttcagctgggctttcctggccctcttccgcctcatgacgcaggacttctgggagaacctc
ttccagctgacgctacgtgcagcagggaaaacctacatgatcttcttcgtggtggttata
tttcttggttccttctacctcatcaacctcatcctcgcagtggtggccatggcttacgca
gaacaaaacgacgccacgatgctggaggagcagcagaaggaggaggaatttcagcagctc
atggagcagctgaagaagcatcaggaggagcaagagaggatgttgcaggagcgacgatcc
agcagcagttccctgcccagcagcgtggccgagaaggagcgcgactcggacctgaacagt
gaccaggacaaggcaaaggactgcaacgggcaagtggtccccaaggtcgtgctggagcgg
tccgctacggtgattgatttcaacccgacccctgagccagagaaatcggaccacaaccac
ctcaccgtgggcaaccaagatgggccaggcctcgagaagagagtggggagcgccatcagt
gtcatctccaacgctgtggaagagctggaggaagctcaccagaagtgcccgccctggtgg
tacaaatttgcccatacgttcctggtttggaactgctgtcctccttgggtgaagctgaag
gagtttgtgaagatggtggtgatggaccccttcgtggacttgggcatcaccatctgcatt
gtgcttaacacagtcttcatggccatggagcactaccccatgacagaggagtttgagaac
gtgctgaccgtgggaaacctggtctttaccgggatcttcacggcggagatggtcctgaag
ctcattgctttggacccctacgagtatttccagcagggctggaatatctttgacagcatc
atcgtcaccctgagcctggtggagctgggcctggccaacgtgcaagggctctctgtgctc
cgctccttccgcttgctgagggttttcaagctcgccaagtcctggcccaccctcaacatg
ctcatcaagatcatcggtaactcggtgggcgccctggggaacctcacactggtgctggcc
atcatcgtcttcatcttcgccgtggtggggatgcagctctttgggaagagctacatagaa
tgcgtgtgcaagatctccctcgactgcacgctgccccgctggcacatgaacgacttcttc
cactccttcctcatcgtcttccgcatcctctgcggggagtggatcgagaccatgtgggac
tgcatggaggtggccggccagaccatgtgcctcatcgttttcatgatggtcatggtcatt
gggaacctcgtggtgctgaacctgttcttagctttgctgctgagctccttcagtgccgac
agcctggcggcatctgacgacgacggagagatgaacaatttgcagatcgctattggcagg
atcaccaaggggatcgactttgtaaaggcctctctcctgatgctgctccgcaggctgtgg
aaggggaagaaggtggccccggaggaagagcaagagcacagtaagaaggacaactctgtg
ctcaaccacgtggacgctggccaggacctcaagttggagtacttggacggagtcgctggc
aaagagcattttttcatggatgaactggaccacatgaatttcattaacaaccccaacctg
acggtgcaagtccccatcgcctcggaggagtctgacctctatgaggagacgagcacccag
tccgacaccgaagatatcaagaaacccctccccggcgacaacgcctcctccctgtgcagc
accgtggattacaagcccccgcagccggaggaggaggaggtggcagaagaggctgaggac
agcaacgagcccgaggagtgcttcaccgaagcctgtgtgaagaggtttccctgcctctac
gtggacgtcaccagcgatcgagggaaggtgtggtggaacctccggaaaacctgcttccgc
atcgtggagcacgactggttcgagaccttcatcgtcttcatgatcctcctcagcagtggg
gcgctggcttttgaggacatctacattgaacaacggaaggtgatacgcaccatcctggag
tacgccgacaaggtcttctcctacatctttgtcatcgagatgttgctcaagtgggtggcc
tacggcttcaaggtgtacttcaccaacgcgtggtgctggctggatttcctcatcgtcgac
gtttcccttatcagcctgacagcgaactggctgggatactctgagctgggagccatcaag
tccctgcggacgctgagggctctgagaccactgcgtgccctgtccagatttgaaggcatg
agggtggtggtgaatgccttgttgggcgccatcccctccatcatgaacgtcctgttggtc
tgcctcatcttctggttgatattcagcattatgggggtgaatctctttgcggggaagtac
taccgatgcgtcaacaccaccacaggggagctctttgacatcagcgtggtgaacaacaag
agcgactgcatggccctcctccacaccaacgaggtccgatgggtcaacgtcaaggtcaac
ttcgacaacgttggcttgggatacctctccttgctgcaggtggcgaccttcaaaggctgg
atggacatcatgtacgccgccgtggactcacgcgagattgaagagcagccggtgtacgag
atcaacctctacatgtacatctactttgtcatcttcatcatcttcggtgccttcttcacc
ctgaaccttttcattggcgtcatcatcgacaacttcaaccagcagaagaaaaagtttgga
ggcaaagacatcttcatgacggaagagcagaagaaatactacaacgccatgaagaagctc
ggctccaagaaacctcagaagcccatccccaggccatcgaacaagtttcaagggatggtg
tttgactttgttaccaagcaagtgtttgacataaccatcatgatcctgatttgtcttaac
atggtgaccatgatggtcgaaacagatgatcaaagtgaactcaaaacatctgtcctctac
aagataaacctggtcttcatcgtcatcttcactggagagtgtgtgctcaaaatgtttgcc
ttgcgttactactacttcactattggctggaacatctttgactttgtggtggtcatcctc
tccatcttaggtatcgtcctctcagacatcatagagaagtacttcgtatcacccacgctc
ttcagggtcatcaggctggcaaggattggtcgtgttctccggctgatccgaggggcgaaa
ggcatccggactctcctctttgctctgatgatgtccctgcctgccctgttcaacatcggc
ctcctgcttttccttgtcatgttcatctactccatcttcgggatgtccaactttgcctat
gtaaagaaggaggcggggatcgatgacatcttcaactttgaaacttttgggaacagcatc
atctgcctcttccagatcaccacgtcagcgggatgggatggcctcctcagccccatcctc
aacagcggcccccccgactgtgaccctgacctggaaaaccctggcagttcggtaaaaggg
gactgtggcaacccctccatcggcatcttcttcttctgcagctacatcatcatttccttt
ctcatcgtggtgaacatgtacattgccatcatcctggagaatttcaatgtggccacagag
gagagcagcgaacccctctgtgaagatgattttgaaatgttttatgaaacttgggagaag
tttgacccagacgccactcagttcatcgcgtacagcaccttatctgactttgtagacacc
ttacaggagccactcaaaattcccaagccgaacaagatcaagctaatcaccatggatcta
ccaatggttgctggggacaaaatccactgcctggatatcctctttgccctgactaaggaa
gtgttgggagactcaggagagatggatgccttgaaggccaccatggaggagaagttcatg
gccgcgaacccctcgaaggtttcctatgagcccatcaccaccactctgaaaaggaaacac
gaggaagtctgtgctacaaaaatccagagggctttccggaggtacctcctgaggcgctcg
gtgaagcaggcatcctacatgtacaggcacagtaaggacgaggaggccctgaaagaggac
gcacccgagaaggaaggtctgatcgccaccaaaatgcacgagatgtatgggcacggtggg
acagacgtggagacggcccctgcctttgatcttgcacccgttcccagctcagagactcga
gatgctcctggcgaagcagaagcgtgggataaggaatgggtggtgaaggagtcgctggta
taa
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