Rathayibacter tanaceti: GSU10_08145
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Entry
GSU10_08145 CDS
T06377
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03030
DNA replication
rte03410
Base excision repair
rte03420
Nucleotide excision repair
rte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSU10_08145 (ligA)
03410 Base excision repair
GSU10_08145 (ligA)
03420 Nucleotide excision repair
GSU10_08145 (ligA)
03430 Mismatch repair
GSU10_08145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rte03032
]
GSU10_08145 (ligA)
03400 DNA repair and recombination proteins [BR:
rte03400
]
GSU10_08145 (ligA)
Enzymes [BR:
rte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GSU10_08145 (ligA)
DNA replication proteins [BR:
rte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GSU10_08145 (ligA)
DNA repair and recombination proteins [BR:
rte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GSU10_08145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GSU10_08145 (ligA)
MMR (mismatch excision repair)
DNA ligase
GSU10_08145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSU10_08145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QHC55609
UniProt:
A0AAE6V6I2
LinkDB
All DBs
Position
complement(1729150..1731666)
Genome browser
AA seq
838 aa
AA seq
DB search
MSAGAGPVEGVAPVDAAARVEELRASIRAASDAYYAADSSPLADAAYDALVRRLAELEAE
HPELAAEDSPTQTVGGIVGAGLAPIDHAERMLSLDNVFSAEELREWCEKTVASADRPIAW
LTELKIDGLAISLRYEHGRLTTAATRGDGRTGEDVTVNAVQVERIPERLAGEGHPALVEV
RGEVFIPVAAFAELNALQERLRDEAVEEARARWSARPASTRGDFEEQKARASALRRFPTF
ANPRNAASGGLRQQLDKKAGLDLRAGEARVASLALFVHGIGAWPDPPVATQSEVYGLLST
WGLPVSRYNQVSASLEEVLAFVERYGRDRHSVEHEIDGVVVKVDELDLHDELGATSRAPR
WAIAYKYPPEEVHTRLLDIVVSVGRTGRATPFAQMTKVKVAGSEVRQATLHNADVVKAKG
VLIGDTVVLRKAGDVIPEVLGPVVELRDGSEREFVMPTQCPECGTTLAPAKEGDVDLRCP
NAESCPAQVRGRVEHIGSRGALDIEALGEVSAAALTQPLVPARPPLRTEAGLFELTVADI
FPIEVVVRDSETGLQKLDASGAPKVVTPFKRKRQPAKDGPFEPGAGPFAGDPSSVPSTNA
LRLIENIERAKTKELWRLLVSLSIRHVGPVAARALAGYFGSLDAIRSASRDELAAVDGVG
GIIADALLAWFEVGWHVEIVERWAAAGVRFSTPGHPGPGAADAAGGVLAGVTVVATGSLE
GYSREGAQEAILAAGGKAGSSVSKKTDYVAAGPGAGSKLGKAEALGLRIITAAEFHLLVT
EGPAAIAPPPEEPDGESRDEGHAGASLAEGSAGEEPAVPAAGSGAPATTAGEPTEPHD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggggcggggccggtcgagggcgtcgctcccgtcgatgcggccgcccgcgtc
gaggagctgcgggcgagcatccgcgcggcgagcgacgcctactacgcggccgactcctcc
ccgctcgccgacgccgcgtacgacgcgctcgtgcgccggctcgcggaactcgaggccgag
caccccgagctcgccgccgaggactcgccgacgcagaccgtgggcgggatcgtgggcgcc
gggctggccccgatcgaccacgccgagcggatgctgtctctcgacaacgtgttctcggcc
gaggagctgcgcgagtggtgcgagaagacggtggcctcggccgatcgcccgatcgcctgg
ctgacggagctcaaaatcgacggtcttgcgatctccctgcgctacgagcacgggcgcctc
accacggcggccacgcgcggcgacgggcgcacgggggaggacgtgacggtcaacgccgtc
caggtcgagcgcatacccgagcgcctggccggcgaggggcacccggcgctcgtcgaggtc
cgcggcgaggtgttcatcccggtggccgcgttcgccgagctcaacgcgctgcaggagcgg
ctgcgcgacgaggccgtcgaggaggcgcgagcgcgctggtcggcccggccggcctccacc
cggggcgacttcgaggagcagaaggcgcgcgcgagcgcccttcgccgtttcccgaccttc
gccaacccgcgcaacgccgcgagcggcggactccgccagcagctcgacaagaaggccggc
ctcgatctgcgtgcgggcgaggcccgggtggcgtcgctcgcactcttcgtgcacgggatc
ggcgcctggcccgatccgcccgtggccacgcagtccgaggtctacggcctgctctccacc
tggggcctgcccgtcagccggtacaaccaggtctccgcgtcgctcgaggaggtgctcgcg
ttcgtcgagcgctacggtcgcgaccggcactcggtcgagcacgagatcgacggtgtcgtc
gtcaaggtcgacgagctcgacctgcacgacgagctcggtgcgacgagcagagccccgcgc
tgggcgatcgcgtacaagtacccgcccgaggaggtccacacgaggctcctcgacatcgtc
gtgagcgtcggccgcacgggccgggcgactccgttcgcgcagatgacgaaggtgaaggtc
gccgggtccgaggtccgccaggccacgctgcacaacgccgacgtcgtgaaggccaagggc
gtgctgatcggcgacaccgtcgtgctgcgcaaggcgggcgatgtgatccccgaggtactc
ggccccgtggtcgagctgcgcgacggcagcgagcgcgagttcgtgatgccgacgcagtgc
cccgagtgcgggacgacgctggcccccgccaaggagggcgacgtcgacctccgctgcccc
aacgccgagtcgtgccccgcacaggtacgcggccgcgtggagcacatcggtagccgtggg
gctctcgacatcgaagcgctcggcgaggtgagcgccgccgcgctcacccagccgctcgtg
ccggctcggccgccgctgcgcaccgaggcggggctcttcgagctcacggtggccgacatc
ttcccgatcgaggtcgtcgtgcgcgactccgagacgggtctgcagaagctcgacgcctcc
ggcgcgccgaaggtcgtcactccgttcaagcgcaagcggcagccggcgaaggacgggccg
ttcgagccgggcgcggggccgttcgccggtgacccctcctcggtgccctcgaccaatgcc
ctgcgcctgatcgagaacatcgagcgcgcgaagacgaaggagctgtggcggctgctcgtc
tcgctcagcatccggcacgtcggaccggtcgcggcgcgcgcgctggccggctacttcggc
tcgctcgatgcgatccggtcggcgagccgcgacgagctcgcggccgtcgacggggtcggc
gggatcatcgccgacgccctgctcgcctggttcgaggtcggctggcacgtcgagatcgtc
gagcgctgggcagcagcgggtgtgcgcttctccactccgggccatcccggccccggggcg
gccgatgcggcgggcggcgtgctcgccggcgtcaccgtggtcgcgaccggcagcctcgag
ggctactcccgcgagggcgctcaggaggcgatcctcgcggccggcggcaaggcgggctcg
agcgtctcgaagaagaccgactacgtggccgctggtccgggagcgggcagcaagctcggc
aaggccgaggctctggggctgcggatcatcaccgcggccgagttccacctcctggtgacc
gagggccctgcggccatcgcgccgcccccggaggagccggacggcgagtcacgcgacgag
gggcacgcgggcgcttcgctcgcggagggctctgcgggcgaggagcccgcggtaccggca
gcggggagcggcgcgcccgcgacgacggcgggggagccgaccgagcctcatgactga
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