Rana temporaria (common frog): 120916504
Help
Entry
120916504 CDS
T07929
Symbol
IRF3
Name
(RefSeq) interferon regulatory factor 3 isoform X1
KO
K05411
interferon regulatory factor 3
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04620
Toll-like receptor signaling pathway
rtem04621
NOD-like receptor signaling pathway
rtem04622
RIG-I-like receptor signaling pathway
rtem04623
Cytosolic DNA-sensing pathway
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120916504 (IRF3)
04621 NOD-like receptor signaling pathway
120916504 (IRF3)
04622 RIG-I-like receptor signaling pathway
120916504 (IRF3)
04623 Cytosolic DNA-sensing pathway
120916504 (IRF3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120916504 (IRF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtem03000
]
120916504 (IRF3)
04131 Membrane trafficking [BR:
rtem04131
]
120916504 (IRF3)
Transcription factors [BR:
rtem03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
120916504 (IRF3)
Membrane trafficking [BR:
rtem04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
120916504 (IRF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
120916504
NCBI-ProteinID:
XP_040183440
LinkDB
All DBs
Position
10:complement(33241040..33275200)
Genome browser
AA seq
470 aa
AA seq
DB search
MASSRPLIIPWLIRKINSQKYPGVEWVNNEKTQFRIPWKHALRQDLSEDDIKIFEDWAID
SGCYDPQRHKPDRARWKRNFRSALNQKDSICMVADYRSNSADPHKVYEITSSNTEIGPGE
QCVAMGGETDFQKLGSCSYQAGGTAESQQRFISEQMTHLQLLQDDAALYCDLEDFQNLYA
IPDTITPAQETDHHVLPSQVPMEGAADYYEGAYAVGSEVPPGVISEVQAGYVHLDQEQET
FQQKILRHFTYNSFETDFEVNIYYRGTKVKSTTVTNRFGFCLTSKQHSPPESYLEDVILP
LAKEKVTDRILIQAVNHIMTNLDQGTRVEVRDGTICAIRLGNCRSFWTITDTPTTRLPSP
IDKNDYSVLYTLQQFVTELIEFVERRSKESPQYSIWICLGETWPDGQPWREKCIMVEIIP
VVMRLLHELSHGTGASSLTSSDLNLEISDSLSSQSSVLSFLRSIEERMDW
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcatccagcagacccctcatcatcccctggctgattagaaagatcaatagtcagaag
tacccgggagtggaatgggtcaacaatgaaaagactcaattcaggattccctggaagcat
gccctgaggcaggacctgtctgaggatgacatcaaaatttttgaggactgggctattgat
agtggctgctatgatccacaaaggcataaaccagaccgagcaagatggaagagaaatttt
cgttcagcactgaatcagaaagacagcatctgtatggttgccgactacagatcgaactcc
gctgatcctcacaaagtgtacgagatcacaagtagcaacaccgagattggacccggtgag
cagtgtgtcgcaatgggtggcgagacagattttcaaaagttgggttcttgtagctatcag
gctggtggcacagcggagtctcagcaaagatttatttcagaacaaatgacacacctacag
cttctccaagatgatgcagcattatattgtgatctggaagatttccaaaatctttatgca
atcccggataccattacacctgctcaagaaactgatcaccatgttttaccatcacaagta
cctatggaaggtgccgctgactactatgagggtgcctatgctgttggcagcgaagttcca
cctggtgtaatcagtgaagtacaagctggatatgtgcacctggatcaagaacaggagacg
tttcaacaaaaaatattgagacactttacctacaactcctttgaaactgattttgaagtc
aacatttattaccgaggaaccaaagttaaaagcaccacagtaaccaaccgatttggattc
tgcctgacttccaaacaacattcgccgccggaaagctatttggaggatgtgattctaccc
ctggctaaggaaaaagttactgatcggatactgattcaagcagtgaaccacattatgacc
aacctggatcaaggaacccgtgtggaagtccgtgacgggacaatctgtgcaattagattg
ggcaactgtcgtagtttttggaccataacagatacacctaccacacgtctgcccagtcca
atagacaaaaatgactacagtgtcttgtacactcttcagcagtttgttactgaattaatt
gaatttgttgaaaggaggagtaaagaatctccacagtattccatatggatttgtcttggg
gaaacatggccagatggccaaccatggcgagagaaatgcattatggttgaaatcataccg
gtggtcatgcgtttgcttcatgagttaagtcacgggactggagcctcatcgctaaccagc
agtgatctgaacctggaaatctcggactcattatctagtcaaagttctgtcctttcgttt
ctgaggagcattgaagaaaggatggactggtga
DBGET
integrated database retrieval system
