Rana temporaria (common frog): 120917068
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Entry
120917068 CDS
T07929
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04010
MAPK signaling pathway
rtem04120
Ubiquitin mediated proteolysis
rtem04140
Autophagy - animal
rtem04144
Endocytosis
rtem04620
Toll-like receptor signaling pathway
rtem04621
NOD-like receptor signaling pathway
rtem04622
RIG-I-like receptor signaling pathway
rtem05132
Salmonella infection
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120917068 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120917068 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120917068 (TRAF6)
04140 Autophagy - animal
120917068 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120917068 (TRAF6)
04621 NOD-like receptor signaling pathway
120917068 (TRAF6)
04622 RIG-I-like receptor signaling pathway
120917068 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120917068 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
120917068 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120917068 (TRAF6)
04121 Ubiquitin system [BR:
rtem04121
]
120917068 (TRAF6)
Enzymes [BR:
rtem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120917068 (TRAF6)
Membrane trafficking [BR:
rtem04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
120917068 (TRAF6)
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
120917068 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
TRAF3_RING
zf-C3HC4_3
Sina_ZnF
zf-TRAF_2
DUF4455
zf-RING_5
RING_XB3-XBAT31
TRAF6_Z2
SlyX
U-box
zf-RING_11
Med21
Spc29
zf-RAG1
Seryl_tRNA_N
ATG16
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
120917068
NCBI-ProteinID:
XP_040184009
LinkDB
All DBs
Position
11:17042892..17072686
Genome browser
AA seq
574 aa
AA seq
DB search
MYDGGGAPSCPTTMSLMNSRTSFESADSDDACCGAMAACGMNTKDDITSPSVETPGANSS
SLVMEETQGYDVDFDPPLESKYECPICLMALREPLQTPCGHRFCKACIIKSIRDAGPKCP
VDNDLLLEHQLFPDNFAKREILSLMVRCPSQDCSARMELRNVEHHQAVCAFASMECLQCQ
QILPRSQMQQHMVVCPRREVSCENCLVSMPYEEKMVHEKKCPLAYVTCEYCETSGLVRHQ
MACHYSMDCIKAPIPCIYSQFGCTEKMQRDDLAQHQQEFTQAHMRMMAQQLISFSPSLSS
TPHMSSMQLDPSQFEPGPPSIYTMPSASASRLISSQREGNQEQQQLKETVEQLEARLVKQ
DHQIRELMAKMETQTALVTDLKQTIRTLEDKLVEVEAQQYNGVFVWKIHHFSAHLKNQEE
EKPVVIHSPGFYTGKPGYKLCLRLHLQLPSAPRCANYISLFVHTMQGEYDNLLHWPFQGT
IRLSILDQSEGSNLQDQEEVMDTKPELLAFQRPTMPRNPKGFGYVTFMHLQALKQRVYVK
NDTLLVRCVVTTHGDLNSPRREGFQPRNTDGTTM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatggtggcggggctcccagctgccccactactatgagtctaatgaactccagg
accagcttcgagtcggccgactcggacgacgcctgctgcggagctatggcggcttgcggc
atgaacaccaaggatgacatcaccagcccctccgtggaaacgcccggcgcaaactcttcc
agcctggtcatggaggagactcaaggctacgacgtggacttcgaccccccactggagagc
aaatacgagtgtcccatctgcctcatggcactgcgggagccgctgcagaccccctgcggg
caccgcttctgtaaggcctgcatcataaagtctataagagacgccgggccgaagtgtcct
gtggataacgatcttctcttggagcatcagctattcccggataattttgccaaacgagaa
atcctttccctgatggtgagatgccccagccaagattgctcggccaggatggagctgagg
aacgtggagcatcaccaggcagtctgtgcgtttgccagcatggaatgcctacagtgccaa
cagattttgccgagaagccaaatgcagcaacacatggtggtgtgtccgcggcgagaagtg
tcctgtgaaaactgccttgtgtctatgccctatgaggagaagatggttcatgaaaagaag
tgccctttggcctacgtaacttgtgaatattgcgagaccagcggccttgtgcgacatcag
atggcctgtcactatagcatggactgtataaaggcccctattccatgtatctacagccag
tttggatgtacggaaaagatgcagagggatgatctggctcagcaccagcaggagttcaca
caggctcacatgcgaatgatggcacaacaactcataagcttcagcccatcgctctcctcg
acccctcacatgtccagcatgcagcttgaccccagccagttcgaacccggacccccttct
atatacacaatgccctctgcctctgcctctcgtctgatctcttcgcaacgtgagggcaat
caagagcagcagcagttaaaggagacggttgagcaattggaggcccgcctagtgaagcaa
gaccaccagatccgagagctaatggccaaaatggaaactcagactgccttagtaaccgat
ctaaagcaaaccatccgtaccttggaggacaagcttgtggaggtggaggctcagcagtac
aatggtgtctttgtgtggaaaatccatcattttagcgcccacctaaaaaaccaggaggag
gagaaaccagtagtcattcacagtccaggattttacactggaaagccaggctacaagctg
tgtctgcgccttcacctgcagctacctagtgccccccgctgtgccaactacatctccctc
tttgtacacacaatgcaaggagagtacgacaatctcctccactggccttttcagggaacc
atccgcctgtccatcctggaccaatcggaaggatccaatttacaagatcaggaggaagtc
atggacaccaaaccggagttgctggccttccagaggcccaccatgccccgaaaccccaaa
ggctttggttacgtcacatttatgcaccttcaggcactcaagcagcgggtctacgttaaa
aacgacactcttctggtgcgctgcgtcgtaacgacacatggggacctcaacagtccgcgc
cgggaaggattccagccgcggaacaccgatggcacaaccatgtag
DBGET
integrated database retrieval system
