Rana temporaria (common frog): 120919359
Help
Entry
120919359 CDS
T07929
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtem04040
]
120919359 (SCN4A)
Ion channels [BR:
rtem04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120919359 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
120919359
NCBI-ProteinID:
XP_040187412
LinkDB
All DBs
Position
12:28087848..28228789
Genome browser
AA seq
1823 aa
AA seq
DB search
MATKMHPPGPDSLRRFTKESLAKIEKYIEEEKIRKEKNIDPLEEEILKANNGLEVGKSLP
LIYGDPAPELIGVPLEDLDPFYRNQKTFIVLNKGKAIFRFTATKALYLLDPFNPLRTGAI
KVLIHAIFSFFIMITILTNCVFMTMSDPPPWSKNVEYTFTGIYTFESLVKIFARGFCIDS
FTFLRDPWNWLDFCVITMAYTTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQ
SVKKLADVMILTVFCLAVFALIGLQLFMGNLRQKCVRWPPTEEAYEYYRNVTIHSMEFDS
NSTFYGDPDMYANVSIDWSPYFNDESNFYYLDGALDALLCGNSSDSGKCPESFVCMKTGR
NPNYGYTSYDSFSWAFLSLFRLMTQDYWENLFQLTLRAAGKTYMVFFVLIIFLGSFYLIN
LILAVVAMAYAEQNEATMQEAIEKEKEFQDMLEQLKKHQEEQGRRKSSVASVGLLNGEKI
KPSSEPDLTEDGTEKLDRNGRVIPRVVIDGVTSLDEDASSVKTDFEKNSKMYLEEPTLLN
RAGSSVSVISEAMIEELEEAQQKCPPWWYKFAHTFLIWDCCKPWVTFKEFVKFVVMDPFV
DLGITICIVLNTLFMAMEHYPMTEQFEEVLSVGNLVFTGIFAAEMVFKIIALDPYDYFQV
GWNIFDSIIVTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNALIKIIGNSVGAL
GNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINSDCVLPRWHMHDFFHSFLIVFRILCG
EWIETMWDCMEVAGQAMCLIVFMMVMVVGNLVVLNLFLALLLSSFSADNLTASDEDGEMN
NLQIAIGRITRGIDFVKKTALSILPFKKKKDEPEDEDANKENIALNHVETNEEPKSESPV
VDGFMKKPRSIMTELDHINLINNPHYRIEVPIASEESDFDIPDTDEVSTQSEMEEGIIQS
KRRFDDGSSMCSTVDYKPPEPDEEQEALEHKEEEGPEDCFTEPCVKRCPCLYVDIKTEKG
KLWWNIRKTCFKIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKVIKTILEYADKVFSY
AFVIEMLLKWTAYGFKIYFTNAWCWLDFLIVDVSLISLTANWMGYSELGAIKSLRTLRAL
RPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNMFAGKFYRCINTTT
SELFDLSVVNNRSECFGLNNTEEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAV
DSRNVEEQPQYEINLYMYLYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTE
EQKKYYNAMKKLGSKKPVKPIPRPENPVQGVVFDFISRQAFDIFIMILICLNMVTMMVET
DDQSEEKVNILFKINLVFIVIFTTECVLKMFALRQYFFTIGWNIFDFVVVILSIAGIVLS
DLIAEYFVSPTLFRVIRLARIGRVLRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMF
IYSIFGMSNFAYVKKESGVDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCD
PHMENPGTAVVGNCGNPSMGIVFFCSYIIVSFLIVVNMYIAIILENFNVATEESSEPLCE
DDFEMFYETWEKFDPGATQFVEYSRMSDFVDTLQEPLRIPKPNKIKLVTLDLPMVTGEKI
HCLDILFALTKEVLGDSGEMDALKASMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKI
QRAFRRHLLKRSVKQASYVYRHSQDLDSVVQDAPEKEGLVAERINSAYGQYLDEGTNGSA
VPQLRSTNRYSRSSGDDVRESCV
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagatgcatcctcccggccctgacagcctgcggcgatttacaaaagaaagc
cttgcgaagatagagaaatacattgaggaggagaagatacgcaaagagaaaaatattgac
cctcttgaggaggaaatactaaaagccaacaatggcctggaagttggaaagagtctgcca
cttatttatggtgatccagctccagaacttattggagtacctctggaggatcttgatcct
ttctatcgtaatcaaaagactttcattgtcctgaataaagggaaagcaatatttcgcttc
actgccaccaaagctttatatttactggacccttttaatcctttaagaactggagcaata
aaagtccttatccatgcaatattcagtttttttatcatgataaccatcttaacaaattgt
gtttttatgaccatgagtgacccaccaccttggtccaagaatgtagagtacacattcacg
ggcatttatacttttgagtccttagtaaagatttttgctcgaggcttttgtatcgatagt
tttacattcctcagggacccatggaactggctggatttctgtgtcattaccatggcttac
actacagagtttgtagatttggggaatgtgtctgctctcaggacattccgcgtcctccgt
gcacttaaaacaatcactgtaattccaggcttgaagaccattgttggcgccctcattcag
tcagtgaaaaagttggcagatgtcatgattttgactgtcttctgtctagccgtctttgcc
ctaattggcctccaattgtttatgggaaatctgaggcaaaagtgtgtgcgctggccacct
acagaggaggcgtacgaatattacagaaatgtaacaatacattctatggaatttgacagc
aactccaccttttatggcgaccctgatatgtatgccaatgtctccattgactggagtccc
tacttcaatgatgagtcaaatttttactaccttgatggagcacttgatgctctcctgtgc
ggcaacagcagtgacagtggcaaatgcccagaaagctttgtgtgtatgaaaactggaagg
aatcctaattatggttataccagctatgactccttcagctgggctttcttgtcgctgttc
aggttgatgacccaagactactgggagaacctcttccagctgactctcagagcagctgga
aagacctatatggttttctttgtgcttataattttcctagggtcattctacctgataaac
cttatcctggctgtagtagccatggcttatgctgagcagaatgaagccaccatgcaagaa
gccatagaaaaggaaaaggaattccaggatatgctggaacagctgaagaaacatcaagaa
gagcagggtcgaaggaaatccagtgtagcatctgtaggactgctcaatggagaaaagata
aagccttcctctgagccagacctcacagaagatggcacagaaaagctggaccggaacgga
agagttataccacgagtggtaatagatggagtgacttctctggatgaagatgcaagctca
gtgaagacggattttgagaagaactctaaaatgtatctggaagagccaactttactgaac
agagcagggagctcagtcagtgttatttctgaagccatgatagaagaactagaagaagcc
cagcagaagtgccccccttggtggtacaagtttgcccatacattcttaatttgggactgc
tgcaagccatgggtgacgtttaaggagtttgtgaagtttgtggtcatggatccctttgta
gaccttggcatcaccatatgcattgtgctcaacaccctgttcatggctatggagcactat
ccaatgactgagcaatttgaggaagtactgagtgtaggcaatctggttttcactggtata
tttgcagctgaaatggtttttaagatcattgctctggatccatatgactactttcaagtg
ggatggaatatatttgacagcattatagtaacactgagtctggtggagctgggcctggcc
aatgttgaaggtctgtcagtcctgcggtcctttcgtctgctcagggtcttcaagcttgcc
aagtcttggcctacgctgaacgcgcttatcaaaattattggtaattcggtaggcgctctt
gggaatctcacgctggtcctggccattattgtctttatctttgcggtggtgggaatgcag
cttttcggaaagtcctataaggagtgcgtttgtaagatcaattcagattgtgttcttccc
cgatggcacatgcacgacttcttccactctttcctcattgtcttccgaatcctatgtgga
gagtggattgaaacgatgtgggactgtatggaggtggcggggcaagctatgtgcctgatc
gtgttcatgatggtcatggtggtgggaaatttagtggtgcttaacctcttcttggccttg
ttgctgagctccttcagtgccgacaatctgactgcttccgatgaggatggggaaatgaat
aacctacagattgccattgggagaatcaccagaggtatagactttgtgaagaaaactgct
ctttccatactgccctttaagaagaaaaaggatgagccggaggatgaagacgccaacaag
gaaaacattgctttaaatcatgttgagacaaatgaagagcccaagtcagaaagtccagtt
gttgatggtttcatgaaaaaaccacgctccatcatgactgaactcgaccacattaatttg
attaataacccacattacaggatagaggtgcccatcgcttctgaagagtctgactttgat
attcctgacacagatgaggtcagcactcagtcagagatggaggaggggatcatacaatca
aagcggaggtttgatgatggttcatcaatgtgcagcacagtagattataaacctcctgag
cctgatgaagagcaagaggcccttgaacataaagaagaggagggaccagaggactgcttt
acagaaccttgtgtgaaaagatgtccatgtctgtacgttgatatcaaaacggaaaaaggg
aaactttggtggaacattcggaaaacctgcttcaagattgttgagcacaactggtttgaa
acatttatcatcttcatgatcctgctcagcagtggagctctggcgttcgaggacatctac
attgagcagaggaaggttataaagactatactagaatatgctgataaagttttctcgtat
gcctttgtgattgagatgttgttaaagtggacagcttatggcttcaagatttatttcact
aacgcttggtgctggctggatttccttattgttgatgtgtctttgatcagtttaactgct
aactggatgggttactcagaactcggagccatcaaatctttgagaaccttgagagccctc
cgacctctaagagcattatcaagatttgaaggcatgagggtggtggtaaatgcactgctg
ggagccatcccttccatcatgaacgtactgctggtttgtctaatcttctggctcatcttc
agtatcatgggagtcaacatgttcgctggtaaattctatcgatgtatcaacacaacaacg
tccgagttatttgacctctccgtggtaaataatcgctcagaatgcttcggtttaaacaac
acagaagaagtgcgatgggttaatgtcaaagtgaattttgacaatgttggtctgggatac
ctttcgcttctacaagtggccaccttcaaaggctggatggatatcatgtatgcagctgtg
gattccagaaatgttgaagaacaacctcagtatgaaataaatctgtacatgtatctatac
tttgtaatattcatcatttttggagctttcttcactctgaaccttttcattggtgtcatc
attgacaacttcaaccaacagaagaaaaagtttggaggaaaagatatattcatgacagaa
gaacaaaaaaaatactacaatgctatgaagaaactgggatcgaagaaaccggtaaaacca
attcctagaccagagaacccagtccaaggagtggtgtttgatttcatctccagacaagcc
tttgacattttcatcatgattctgatttgccttaacatggtgacaatgatggtagagacg
gatgaccagagtgaagagaaagtcaatatacttttcaaaatcaatttggtcttcattgtc
atcttcacgacggaatgtgtccttaaaatgtttgcactcagacagtacttcttcaccatt
gggtggaatatttttgattttgtagtggtcattctttctattgctggtattgtcctatca
gatctgattgcagagtactttgtttccccaacattgttcagagttatccgactggccaga
attggaagggttctccggcttattaaaagcgccaaaggcatccgaaccttgttgtttgcc
ttgatgatgtctctcccagccctcttcaacattgggctgctgctgttcttagtcatgttt
atctactccatatttgggatgtccaactttgcttatgtaaagaaggaatctggcgttgat
gatatatttaatttcgagacatttggcaatagtataatttgcttgttccagataactacc
tcagctggatgggatggacttttgaatccaattcttaatagtggtccccctgactgtgat
cctcatatggagaatcctgggaccgcggtggttggtaactgcggcaacccctccatgggc
attgtattcttctgcagctatatcatcgtttcatttttgattgtggtcaatatgtacatc
gcgatcatcttggagaattttaacgtggccacagaagaaagcagtgaacctctatgtgaa
gacgattttgagatgttctatgaaacttgggagaagtttgatcccggtgcaacacagttt
gttgaatacagtcggatgtcagactttgttgataccctacaagaacctttacgaatcccc
aaacccaacaagattaaattggtcacactggacttgcccatggtaactggagagaagatt
cactgcttagatattttgtttgcacttactaaagaagtcttaggggactctggagagatg
gatgccctaaaagcctcaatggaagaaaagtttatggctgcaaacccctccaaagtttct
tacgaacccattaccaccacattaaaaagaaagcaagaggaagtctgtgccatcaaaatc
cagagggctttcagaaggcacctcctcaaacgctctgtgaaacaggcttcctatgtctac
cgccatagccaagatcttgactccgtcgtccaggatgctccagagaaagaaggactagtg
gcagaaagaataaactctgcatatggccaatatctagatgaaggaactaatggaagcgca
gttccacaattacgatctacaaacagatattcacgtagcagtggagatgatgtaagggaa
tcctgcgtttag
DBGET
integrated database retrieval system
