Rana temporaria (common frog): 120920536 Help Entry 120920536         CDS       T07929                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism rtem  Rana temporaria (common frog) Pathway rtem04115   p53 signaling pathway rtem04145   Phagosome rtem04148   Efferocytosis rtem04350   TGF-beta signaling pathway rtem04510   Focal adhesion rtem04512   ECM-receptor interaction rtem04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:rtem00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120920536 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120920536 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120920536 (THBS1)    04148 Efferocytosis     120920536 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     120920536 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     120920536 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120920536 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:rtem04131]     120920536 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:rtem00536]     120920536 (THBS1) Membrane trafficking [BR:rtem04131]  Endocytosis   Phagocytosis    Opsonins     120920536 (THBS1) Glycosaminoglycan binding proteins [BR:rtem00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120920536 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF TSP1_CCN Laminin_G_2 Laminin_G_3 cEGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  120920536 NCBI-ProteinID:  XP_040188606 LinkDB All DBs Position 13:complement(83348370..83365466) Genome browser AA seq 1176 aa AA seqDB search MVLTKGIFLLLMLAVPHTKQASENRADDNSVFDLFEITGISRKLSSRKSQGVSLVKGPDP SSPAYRIENPNLIPPVPEEKFQDLLDSVRAERGFILLATLRQIKKTRGALLSIERKDGTG HVFSLTSNGEAGTLDLSISTEDKQQVVSVEEARLATGHWKNITLFVQEDRAQLYVGCDKM ENAELDVPIHHFLSGDLASTAQMRVAKGGVKDNFQGVLQNLRFVFGTSMDVILRNKGCSS SNYDLENSVNDSRPAIRTNYIGHKTKDVDGVCGISCDELKNMFYEMKGLKAVISNLQTKI QKVTEENMLIAEVVKVKVTPGGVCMHNGVKYNNMDEWTVDSCTECTCQNSVVICRKVSCP LIPCTNATIPDGECCPRCWPSDSPEDGWSPWSDWTPCSVTCGHGVQQRGRSCDSLNNRCE GSSVQTRSCTIQECDKRFKQDGGWSHWSPWSSCSVTCGSGMMTRIRLCNSPVPQLNGKHC VGEGRENKPCQKDPCPINGQWGPWSPWDICSVTCGGGVQKRERLCNNPKPQFGGKTCLGD NADSRICNKQDCPIDGCLSNPCFAGVTCTSFDDGSWQCGACPIGYRGNGIECTDVDECKE VPDACFNINGVHRCKNTEPGYNCLPCPPRYTGTQPFGKSIVDAKSNKQVCIPQNPCLDGT HNCNKNAKCIYLGLYSDPMFRCECKPGYAGNGIICGEDTDLDGWPNENLTCVDNATYHCK KDNCPNLPNSGQEDYDKDGIGDACDSDDDNDGIPDDRDNCAFVYNPAQYDLDRDDVGDRC DNCPYNHNPDQADTDGNGEGDACSVDIDGDGILNEADNCPYVYNVDQKDTDKDGIGDQCD NCPLEHNPDQTDSDSDLIGDKCDSNEDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDAC DHDDDNDGIPDEKDNCRLVPNPDQIDSNGDGRGDVCQFDFDNDNIPDAEDVCPENYAIST TDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSSVDFSGTFFI NTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTKAQGYSGLSIKVVNSTTGPGE HLRNALWHTGNTAGQVRTLWHDPRHTGWKDFTAYRWHLIHRPKTGFIRVVMYEGKKIMAD SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3531 nt NT seq  +upstreamnt  +downstreamnt atggtactaacaaagggtattttcctgttattaatgctggcagttcctcacacaaaacaa gcatcagagaatagagcagatgacaacagcgtctttgatctgtttgaaataactggaatc agtcgcaagctgagctctcgcaaatctcaaggagtttctttggtaaagggtcctgatcca tcaagcccagcttatagaatagagaatcccaatcttatacctccagtgccggaggaaaaa tttcaagatctgcttgacagtgttcgagctgagcggggctttattttattggctacttta cgtcaaataaagaagactagaggagcactcttgtctattgaaagaaaagatggcacagga cacgttttcagcctcacatccaatggtgaagctggaacattggacttgagtatcagcaca gaagacaagcagcaggtggtgtctgttgaagaagccaggctggctacaggccactggaag aacattactctttttgtgcaggaagatcgggctcaactttatgtaggatgtgacaagatg gaaaacgctgagcttgatgtgcccatccatcattttctctctggagacttggcaagcact gctcaaatgagagttgcaaagggaggtgtgaaagataatttccagggtgtcctacagaac ctgcgttttgtttttggaacgagtatggatgtgattcttagaaacaaaggctgctccagc tcaaattatgatttggagaactcagtcaatgactctcgtccagctatccgaaccaattac attggacataagacaaaggatgttgatggtgtatgcggcatttcctgtgatgagctaaaa aatatgttttatgagatgaaaggacttaaagcagtgatctcgaatctccagacgaaaatt cagaaagttacagaggaaaatatgcttatagctgaagtggtgaaggttaaggtgacacca ggtggtgtgtgcatgcataatggagtcaaatataacaacatggatgagtggaccgtggac agctgtactgagtgtacatgtcagaattcagtggttatttgtcggaaagtttcttgccca ctaataccctgcaccaatgccacaattcctgatggagaatgctgccccaggtgttggcca agtgactctcctgaagatggttggtctccatggtcagattggactccttgctctgtaaca tgtggccatggtgtccagcaaaggggccgatcttgtgatagccttaataaccgatgcgag gggtcctctgtccagaccagatcttgcacaatacaagaatgtgataaacgatttaaacaa gatggtggatggagtcactggtcgccatggtcctcatgttctgtcacttgtggaagtgga atgatgactagaatccgtctttgcaattcacctgttccacagctgaatggcaagcattgt gtgggtgaaggaagagagaataagccatgtcaaaaagatccttgtccaattaatggtcag tggggaccgtggtcaccctgggacatatgcagtgtgacatgtggaggtggtgttcagaaa cgagagcgtctctgcaacaatcccaagccccagtttggtggtaaaacctgccttggagat aatgctgatagccgcatttgcaataagcaggactgtcccattgatggatgcttatcaaat ccttgttttgctggagttacatgcacaagctttgatgatggctcttggcagtgtggtgct tgccctatagggtataggggaaatggcattgaatgtacagatgttgatgagtgcaaggag gtacccgatgcctgctttaacattaatggagtgcacagatgtaagaatacagagcctggg tacaattgtcttccctgtcctccacgatacactggcacacaaccatttggcaagagtatt gtggatgccaaatcaaacaagcaggtctgcatccctcagaacccatgtcttgatggaaca cacaattgtaacaagaatgcaaaatgcatataccttggcctttactctgatcccatgttc cgttgtgaatgcaaaccaggttatgctggaaatggcattatatgtggtgaagacacagac ttggatggatggcctaatgaaaaccttacatgtgttgataatgctacttatcattgcaaa aaagataactgccccaatctccccaactcgggccaagaagactatgataaagatggaatt ggagatgcctgtgatagcgatgatgataatgatggaatcccagatgacagggacaattgt gcatttgtatacaaccctgcgcagtatgacttagaccgtgatgatgtgggtgatcgctgt gacaactgcccatacaaccataatccagaccaggctgatactgatggcaatggggaagga gatgcctgttctgtggatattgatggagatggtattctcaatgaagcagacaactgccct tatgtatacaatgtagaccagaaggatacagataaagacggcattggagaccagtgtgat aactgtcccttggagcacaatccagatcagactgactctgactccgatctcattggtgat aaatgtgacagcaatgaagacatagatgaggatggtcatcagaataacctggacaactgt ccttacatccccaatgccaatcaggctgaccatgataaggatggcaagggtgatgcttgt gatcatgatgatgacaatgacggtattccagatgaaaaagataattgcaggctggtgcct aatcctgatcagattgatagtaatggtgatggacgtggtgatgtctgccaatttgacttt gataatgacaacattccagacgctgaagatgtttgccctgagaattatgcaattagcaca actgactttcgtaaattccaaatggtgcctctggatccaaaaggaacatcacagattgat cctaactgggtggtcaggcaccagggaaaagagctggtacagactgttaactgtgaccct ggcattgctgttggttttgatgagtttagttcagtggatttcagtggcaccttcttcatc aacactgagagggatgatgactatgctggctttgtgtttggctaccaatctagcagcaga ttttatgtggttatgtggaaacaaattacccagacctactgggacacaactcccactaaa gctcagggatactctggtctctctataaaagttgtaaactcaacaacaggacctggagaa cacttacgaaatgctttgtggcacacaggcaacacagcaggacaggttcgtaccctgtgg catgaccctcgtcatacaggatggaaagattttactgcttacagatggcatttaatccac agaccaaagactggattcattcgtgttgtaatgtatgaagggaaaaaaatcatggctgac tcaggacctatttatgataagacatatgctggaggaagattaggactgtttgtattctca caagagatggtgttcttttcggatcttaaatatgagtgcagagactcttaa

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