Rana temporaria (common frog): 120920906
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Entry
120920906 CDS
T07929
Symbol
TRAF3
Name
(RefSeq) TNF receptor-associated factor 3 isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04620
Toll-like receptor signaling pathway
rtem04621
NOD-like receptor signaling pathway
rtem04622
RIG-I-like receptor signaling pathway
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120920906 (TRAF3)
04621 NOD-like receptor signaling pathway
120920906 (TRAF3)
04622 RIG-I-like receptor signaling pathway
120920906 (TRAF3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120920906 (TRAF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
ATG16
zf-C3HC4
zf-C3HC4_2
Cast
Sina_ZnF
DUF3450
GAS
zf-RING_6
NPV_P10
Crescentin
DUF16
DUF1664
MG280
RNase_Y_N
USP8_interact
Motif
Other DBs
NCBI-GeneID:
120920906
NCBI-ProteinID:
XP_040189268
LinkDB
All DBs
Position
13:4011395..4151260
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AA seq
573 aa
AA seq
DB search
MNKFSGYIMDASKRVEPAVSSQTLQQRANPDRSLATTIYVPEQGGYQEKFLKHVEEKYKC
EKCRLVLCNPRQTECGHRFCETCMNSLLSSSSPQCTACEEIIIKDKVFKDNCCRREVLAL
QMYCRNDTRGCKEQITLGNLLIHLKSDCQFEELPCPRADCKDKVFRKDLSEHIEKKCKYR
EMPCQYCKNQVPLAEMQKHEEMDCPSVVVSCPHKCSVKSLLRSELNAHLAECVNAPSTCS
FKRYGCSFKGTNQQIKAHEASSAVQHVNLMKEWSSFLESKVSLLQNESSEKNKSIQILHK
QMCNFEVEIERHKEMLRNNESKIHQLQRVIEGQAEKLKDLDKEIHSLRQTGEDADNIKST
LESLQARLAQLETISKTAAAWNPGVLETQINRHDQMLSVHDIRLADMDLRFQVLETASYN
GILIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKNTHLSLFF
VIMRGEYDSLLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP
VFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttagcggttatatcatggatgcaagcaaaagagttgagccagccgtgtct
tcacaaacactacagcagcgagccaacccagatcgcagcctcgccactaccatctacgta
cccgagcaaggggggtaccaagagaagttcctgaagcatgtggaagagaagtacaagtgt
gaaaagtgtcggctagtcctctgcaacccccggcagacagaatgtgggcaccgcttctgt
gagacctgtatgaattcgctgctaagctcttcaagtccacaatgcacggcatgtgaagaa
ataatcattaaagacaaggtgtttaaggataactgttgtcggcgggaagtgttggctctt
cagatgtactgcaggaatgatactcgaggctgcaaggagcagatcacactaggaaatcta
ctgatccacttaaaaagcgactgccagtttgaagaacttccctgcccccgagcggactgc
aaggacaaggtatttcgcaaggacctgagcgaacacatagagaagaaatgcaaataccgc
gagatgccgtgtcagtactgcaaaaaccaggtgccgctagcggaaatgcagaaacacgag
gagatggattgcccgtctgtcgttgtttcctgtcctcataaatgtagcgtaaaaagctta
ttaagaagtgagctgaacgctcacttagcggaatgtgtgaacgcccccagtacttgcagt
tttaaacgttacggctgcagttttaagggcacgaaccagcagattaaagcacatgaagcc
agttcagctgttcagcatgtcaacttaatgaaagaatggagtagttttctggagagtaag
gtgtccctattacagaatgaaagttcagaaaagaacaaaagtattcagatacttcacaaa
cagatgtgtaactttgaggtggagatcgagagacacaaagagatgctgagaaacaatgaa
tccaaaatccaccaactgcagagagtaattgaaggccaagcagaaaagctaaaggacttg
gataaggaaatccatagcttgcggcagaccggggaagacgcagataatataaagagcact
ctggagtcactacaggcccgtctggctcagctggagacgataagcaagactgctgctgca
tggaatccaggtgtcctggagacccaaattaatagacacgaccagatgttgagcgttcac
gacatccgcctggccgacatggacctccggttccaggtcctggagaccgcaagctacaac
ggcattttgatctggaaaatccgcgattacaagaggcggaagcaagaggccgtcatggga
aagacattgtcgctgtacagtcagccgttctacaccggctactttggctacaagatgtgc
gccagggtctacctgaacggggacggcatggggaagaacactcacttgtcgctgttcttc
gtcatcatgaggggagagtacgattctctgcttccttggccgttcaaacagaaagtaagc
ctcatgctaatggaccagggaccgtcacgccgccaccttggcgacgccttcaagccagac
cccaacagcagcagcttcaaaaaacccaccggggaaatgaacattgcctccgggtgcccc
gtgtttgtcgctcagaccgtgctggaaaacgggacgtacataaaagacgatactattttt
attaaagtcatagtcgatacgtcagacttgccggacccttga
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