Rana temporaria (common frog): 120932156
Help
Entry
120932156 CDS
T07929
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1
KO
K02084
apoptotic protease-activating factor
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04115
p53 signaling pathway
rtem04210
Apoptosis
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
120932156 (APAF1)
04115 p53 signaling pathway
120932156 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120932156 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
NB-ARC
Beta-prop_TEP1_2nd
APAF1_C
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
APAF-1-like_WHD
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
CARD
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_SCAP
WD40_like
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
PEP5_VPS11_N
WD40_RFWD3
CARD_2
AAA_16
AAA_22
Beta-prop_IFT122_2nd
NPHP3_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
120932156
NCBI-ProteinID:
XP_040200273
LinkDB
All DBs
Position
3:223975832..224099276
Genome browser
AA seq
1244 aa
AA seq
DB search
MDERARSLLLQNRAALAKDIRTAYIMDHMIGDEVITPQEEEKVKSQVTHVDRAHRLIDLL
LGKDNRAYVSFYNALLHEGYKDLAALLKGATSIDVTGSIKAAVNGITSFVKTALCEGGVP
QRPVVFVTRKHLIQNIQDCLYSLSNDAGWVTVYGMAGCGKSVLAAEALRDHQILNDCFPG
GVHWVSIGKQDKAGLLMKLQNLCTRLDQDCKYSQRPPLNIEEARDRLRLLLNRLFPRSLL
ILDDVWDPWVLKAFDVQGRVLITSRDKSVTDAVSGIKRFVHVDSELEHTKGLEILSRYVD
KGVEELPEEAQQIIKESKGSPLVVSLIGALLREFPNRWAFYLKQLQRKQFQRIRKSSSYD
YEALDEAMSMSVDRLKDAIKEFYNDLSVIEKDVKVPTQVLCILWDMESEDVEDMLQEFVN
KSLLYCDRNGKSFLYYLHDLQLDFLTERNRDQLPALHAKLVNQYKKYYSRGLPTMEQEDC
AYWYHYLAYHMAQANMPKDLCSLLFSLDWLKSKMGLYGPAHLIHEFVRYRDILNKQDSKT
REDFQEFLSVNGHLLGQNSHINLIQLGLSQPDDSMVYKQSICQAKNELQHGALYVNWINK
QSMKNLASLAVRPHTEAVYNACFSHDRQKIASCGADKTLQVFKSETGENLLHIEAHEDEV
LCCAFSADDRFIATCSGDKKVKIWNALTGKLIREYVEHSEQVTCCQFTNGNAASLLATCS
YDCTLKLWDIDKKYCLNTLFGHSDRVNHCRFSPDDKYLASCSMDGILLIWEVSSANEYKS
IDVAQSFQSEDESQFLLKCCSWASDCSRVMVTARNYLYIFDVESSDLVSELEACHQSITI
LYCDFCTSNQIVAMALSHYVVQLWNIDSNTKIAEFNAHLSWVHCVKFSSEGSSFLTCSDD
QTVKLWETSKVCKPSGIILKHEFCNFDVAFTGDKVTVLASDKENCLLQINGNTGDVVQHS
NSQQSPITCCCLSCDGLLAAVGGDDGSVQVFDLATGKFLKHLQGHRKTVQHCQFTSDGKI
LISSSDDSSIRVWHWMAERSILLLGHKEAVKCFRILQDYKLLSWSFDGTVRIWDLINETK
EEEFLCHTGAVLSCDVSPNYLMFSSTSADKSAKIWSFVGSLLHELTGHQSCVRCSNFSSD
NNHLTTGDDNGEIMIWNVDTGELLRQCHVNKGDDWVKDIHFSPDNKLIVSCGADVKWWDV
DSGACKQTFYTNGTNLKSIHPCSSFRTFVTIDNLGILYVLQLVE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagagcccgcagcttgctgctgcaaaaccgagcagcactggcaaaggacatc
aggactgcctacatcatggatcacatgattggcgatgaagtcattacaccgcaagaggaa
gagaaagtgaaaagtcaggttactcacgttgaccgagcccaccggctgattgatttgctt
ctcggcaaagacaatcgtgcatatgtttccttttacaatgctctgctacatgaagggtac
aaagacctggctgcacttcttaaaggagctacttctattgatgtgactggtagtatcaaa
gctgcagtgaatggtattacatcatttgtaaaaacagctttgtgtgaaggtggggtacca
cagagacctgtcgtgtttgtcactcggaagcatcttatacagaatatccaggactgctta
tacagtttgagcaacgatgctggttgggttacagtgtatgggatggcaggctgcggcaag
tcagtgttagcggctgaagcactccgggaccaccagatcctaaatgactgttttccaggg
ggagtacattgggtttctattgggaaacaggacaaagcaggactgctgatgaagctgcag
aatctctgtacacgtctggatcaggactgcaagtattcacagagaccccctctcaacatt
gaggaggcaagagaccgcctgcgactactcttgaaccgccttttccctagaagcctttta
atattggatgatgtttgggatccctgggtgttgaaggcatttgacgtccaaggccgggtc
ctcattacaagcagagacaaaagtgtaacggatgctgtgtctggaataaaacgctttgtt
catgtggacagtgaactagagcacacgaaaggcctggaaattctgtctcgttatgttgat
aagggtgtggaagaactgccagaagaggcgcaacaaatcataaaggaatcgaaaggctcg
cctcttgttgtgtctttgattggtgctctgttgcgagaattccccaatcgctgggccttc
tacctcaaacagcttcaaaggaagcagtttcaaagaattaggaaatcttcctcctatgat
tatgaagcactagatgaagccatgtctatgagtgtggataggctgaaagatgctatcaag
gagttctacaatgatttatctgttatagagaaagatgtgaaggtaccaactcaggttctg
tgcatcttgtgggacatggaaagtgaggatgtagaggacatgctgcaggagtttgtcaac
aaatcattattatactgtgatcgcaatggaaaatcgttcctgtattacttgcatgatttg
caattggattttcttacagagaggaaccgggatcagttgcctgctcttcatgccaagctt
gtaaatcagtataaaaaatactattctcgtgggcttcctactatggaacaagaagattgt
gcatactggtaccattacctagcataccacatggcacaggctaatatgcctaaagacctc
tgttctcttctgttttctctggactggttaaaatctaagatgggattatatgggccagca
catctcattcatgagtttgtacgttaccgggacattcttaataagcaggacagcaaaaca
cgggaagattttcaggagtttctgtctgtgaatggccatctcctgggacagaattctcac
attaacctcattcagttgggtctttctcagcctgatgactccatggtatacaagcaatca
atttgccaagccaaaaatgagctccagcatggagctctctatgtgaactggataaacaaa
caaagtatgaagaacttggccagcctggcagtgcgtcctcacacagaggcagtgtataat
gcgtgcttttcccatgacagacagaaaattgcatcctgtggagctgataaaaccttacag
gtctttaaaagtgaaaccggggagaacctgctacatatagaggctcacgaggatgaagtg
ctgtgctgtgcattttctgctgatgacagatttattgcaacctgctcaggagacaagaaa
gtgaagatttggaatgcattgaccgggaagctcataagggagtatgtggagcactccgag
caggtcacatgctgccaattcaccaatggaaacgctgcttccctgctggccacctgttcc
tatgactgcacactgaaactgtgggacattgataagaagtattgtctgaacacccttttt
ggtcattcagatcgcgtgaaccattgcagattttcacctgatgataagtatttggccagt
tgttctatggatggcattttactgatctgggaagtatcatctgctaatgagtataagagt
attgatgtagcacagtctttccaaagcgaggatgaatcgcagtttctactcaaatgctgt
tcttgggccagcgattgttccagagttatggtgactgcccggaattacctatatatattt
gatgttgaaagcagtgaccttgtgtctgaacttgaggcatgccaccagagcataactatt
ttgtactgtgatttctgcacatccaatcaaattgtagcaatggccctgtcgcactatgtt
gttcagctttggaatatagactccaacacgaaaatagcagaattcaatgcacatttaagt
tgggttcattgtgttaaattttccagtgaagggtcctctttcttgacctgttcagatgac
cagactgtgaagctctgggagacgagtaaagtgtgcaagccctcaggtattatcctaaag
catgaattttgtaattttgatgtggcattcactggagataaagtgaccgttctggcatct
gacaaggaaaattgcttactgcaaattaatggaaatacaggagatgttgttcaacacagc
aatagccagcaatctcctataacttgctgctgtttgagctgtgatggccttttggcagct
gtaggtggtgatgacggatctgtccaggtttttgatttagcaactggcaaatttcttaag
catcttcaaggtcacagaaagactgtacaacactgtcagttcacgtcagatggaaaaata
cttatttcaagctcagatgattcctctattagggtttggcactggatggctgaacgtagc
attttattactagggcacaaagaagctgtgaagtgtttcagaattttgcaagattacaaa
cttctgtcctggtcatttgatgggacagtgaggatatgggaccttattaatgaaactaaa
gaagaagagttcctttgtcacactggtgctgttttgtcttgtgatgtttcacccaactac
ttaatgttttcatccacttccgcagacaaaagtgccaagatttggagttttgttggatct
ctattgcatgagctgaccggtcatcagagctgtgtgcgctgctccaacttttcttcagac
aacaatcatctaaccactggcgatgacaatggagaaatcatgatttggaacgtggacact
ggggagctgctcagacagtgtcatgtaaataaaggtgatgactgggtgaaggatatacac
ttctctcctgacaataaactaatagtatcctgtggagctgatgtcaaatggtgggacgtg
gactctggagcctgcaaacagaccttctacacaaatggcacaaacttaaagtcaattcac
ccatgttcttcttttagaacttttgtaaccattgacaatcttggaattctgtatgtgctt
cagttagtggagtaa
DBGET
integrated database retrieval system
