Rana temporaria (common frog): 120933591
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Entry
120933591 CDS
T07929
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120933591 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtem03000
]
120933591 (KDM2B)
04121 Ubiquitin system [BR:
rtem04121
]
120933591 (KDM2B)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120933591 (KDM2B)
Enzymes [BR:
rtem01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120933591 (KDM2B)
Transcription factors [BR:
rtem03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120933591 (KDM2B)
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120933591 (KDM2B)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120933591 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120933591 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
120933591
NCBI-ProteinID:
XP_040202814
LinkDB
All DBs
Position
1:complement(179922206..180121290)
Genome browser
AA seq
1260 aa
AA seq
DB search
MEAKKGSGRRLRAIGRTQYAEHEDLSDVEDVVSVRGFSLEQKVSSTNYRGDYVQVMEGKD
FTYEYVQREALRVPLLFLSKDGLGIKMPDQDFTVRDVKLLVGSRRIVDVMDVNTQKGTDM
SMSQFVRYYETPEIEREKLYNVISLEFSHTKLEKVVKRPTVVDTVDWVDNMWPQHLKVKQ
KEATNVLSVMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPPTVYNL
QLYEEWLLSGKQTDIFLGDRSQGCQRIELKQGHTFFIPSGWIHAVYTPADSLVFGGNILH
SFNIPMQLRVFEIEDRTRVHAKFRYPFYYEMCWYVLERYVCTLTNRCYLNKEYQKESMLF
ESTGRPSIDSLSSDSWLEMEEESCDAHTLDEKDDHGEKISKLSGDESLTPNSTQSDGKES
AEKKQKATLMHYLKRTLSNDSDESSRSVVHSDFPKTPSESPSTEVTSRWTHLTEFELKGL
KALVEKLESLPENKKCVPDGIENPHALLEDMKTVLKEHADDDQNLAISGVPVVSWPKKPA
KNRAVGRPKGKLATSPAVKLSTNRTSAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDCVEGQEAKFNVMLMECSICNEIIHP
GCLKIKESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLKEQKMN
RDNKEITELVKKKEREETPRQNLEEQPKKKVLEGIVKRKPEDGPFKRKRPLEKTSDPAVR
KRLKLVKEDKLFKKKKRTWKTPEERALMAKTLKRIKQEPDDDMGESVPKSKESDQSRSSS
PTAGPSTEGAESKEKKKIRRKRKVSNKELSKELSKELNQEIQKTENSLANENHHPIKSEP
ESEDEEPKKCTNTNGERMHRFSKELNGTPKEFKHQSLPSPRTTPRVTNRPPPALSPPKCV
QMERHVIRPPPISPPPDSLPLENGATHVMQREVWMAIFSYLSHKDLCICMRVCKTWNRWC
CDKRLWMRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLMNRLPALRDLNL
SGCSWIAVSALCSSSCPLLRLLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNII
ELRLAGLDITDATLRLMIRHMPLLSKLDLSYCNHVTDQSINLLTAVGTSTRDSLSEINLS
DCNNVTDQCLTYFKRCGNICLIDLRYCKQVTKESCEQFIAEMSVIVQFGQTEEKLLQKIS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagaaaggctctggaagaagattgcgtgccatcggtcggacgcagtacgcc
gagcatgaagacctatcggatgtggaggatgtggtcagtgttcgtggcttcagcctggag
cagaaggtcagcagcaccaactaccgaggggactacgtgcaggtcatggagggcaaagac
tttacatatgaatatgttcaaagagaagcccttagagttcctcttctttttctcagcaag
gatggactaggtattaagatgccagatcaggattttaccgtcagggatgtgaaactatta
gtcggaagccggcgtatagttgatgtgatggatgtgaatacacaaaagggtacagacatg
agtatgtcacagtttgttcgctactatgagacaccagagattgaaagggagaagctgtac
aatgtgatcagcctggagtttagccacaccaagctagagaaagtagtcaagaggccaact
gtggtagacacagttgactgggtagataacatgtggcctcaacatttaaaggtgaaacaa
aaagaagcaactaatgtcttatctgtaatgaagtatcccaaagttaaaaagtattgtttg
atgagcgtcaaaggttgtttcactgatttccatattgactttggagggacatccgtatgg
taccatgtttttcgaggtggaaaggtattttggttgattcctcccactgtgtataacttg
cagctttatgaggaatggcttttatcagggaaacaaactgacatattcttaggagacaga
tcacagggttgtcagaggattgaactgaagcaaggacacaccttctttatcccatcagga
tggattcacgccgtgtacactccagcagactctttggtgtttggtggcaacatactgcac
agctttaatattcccatgcaacttcgtgtgtttgagatcgaagacagaacaagggtgcat
gccaaattccgctatcctttctattatgaaatgtgttggtatgtcctggagagatatgtt
tgcactttaaccaaccgctgttaccttaacaaggagtatcagaaggaatccatgctattt
gaatcaacaggaaggcccagtattgacagcttgtcctcggattcttggttggaaatggag
gaagaatcctgtgatgctcatacgttggatgagaaagatgaccatggagaaaagatatcc
aagctatcgggtgatgagtccttgacacctaatagtacacagtcggatggcaaagagtca
gcagaaaagaaacaaaaggccacattaatgcactatttaaaaaggactctatctaatgac
tctgatgaaagctccaggtctgttgtgcacagtgacttcccaaaaaccccatcagaatct
ccatctacagaggtgacttccagatggacgcacctcacagagtttgaactaaagggctta
aaagccctcgtggagaaactagagtctcttcctgaaaataagaaatgtgttccagatgga
atagaaaatccacatgctcttctggaagatatgaagactgtactcaaggaacatgcagac
gatgaccagaatctggccatttctggagtacctgtcgtgtcttggcccaagaaacctgcc
aagaaccgggcagtaggaagaccaaaagggaaacttgccacctctcctgcagtcaaatta
tctactaaccggaccagcgctggtgcccgtcggagacggacgcggtgtcgcaagtgtgaa
gcatgtttacgtacagagtgtggagaatgccacttctgcaaagacatgaagaagtttggt
ggtccggggaggatgaaacagtcatgtataatgcggcagtgcatagctcctgttttgcct
catacagctgtctgtttagtatgtggagaagcaggaaaggaggactgtgtggaaggccag
gaagcaaaatttaatgtcatgttgatggaatgctccatctgcaatgaaataatccatcca
ggatgccttaagataaaggaatctgatggtgtggtgaatgatgaacttccaaactgctgg
gaatgtccaaaatgcaaccatgctgggaaaactgggaaagtctacaagcaaaaaagaggt
ccaggatttaagtatgcttccaacctgcctgggtccttgcttaaagagcagaagatgaat
cgggataataaagagataacagaacttgtaaagaagaaagaaagagaggaaacccccagg
cagaatttggaagaacagcccaaaaagaaggtcttggagggaattgtaaaacgaaaaccc
gaggatggcccctttaagaggaaacggccactggaaaaaacttctgaccctgcagtcagg
aagaggttaaaactagttaaagaagacaagctcttcaagaaaaagaagagaacctggaag
acaccggaagaacgagcacttatggccaaaacattgaagcgcattaaacaggagccagat
gacgatatgggagaatctgtccccaaatcgaaggagagtgaccagtccagatcgagttca
cccactgcgggtcccagcacagagggtgcagagtctaaggaaaagaagaaaatcagaagg
aaaagaaaagtctctaataaggaactaagcaaagaattaagcaaggagctaaaccaagag
atccaaaaaacagaaaatagcctggccaatgagaaccatcatcctattaaatctgagcca
gagagcgaggacgaggagcccaagaaatgtacgaacaccaatggggagcgtatgcatcgc
ttcagcaaagaactgaatgggaccccaaaggagtttaagcaccagtctcttccaagtcca
aggacaacgccaagggtcaccaatcgccctcctccagctttgtcacctcccaaatgtgtg
cagatggaacgccatgtaataaggcctcctccaatcagccctcctccagactctctaccc
ctggagaatggtgcaacccatgtgatgcagagagaggtttggatggccatctttagctac
ctcagccacaaagatctgtgcatctgtatgagagtttgcaaaacgtggaatagatggtgc
tgtgataaaagattgtggatgcgaattgatttaaaccactgcaaatccataactcctctt
atgctcagtgggatcatcaggaggcagccggtgtccttagatttaagctggacgaatatc
tcgaagaaacaactaagctggctcatgaaccggctcccagctctaagggatctgaattta
tcaggctgttcttggattgccgtatctgcactttgtagttccagttgtccattgctgaga
ttgctcaatgttcagtgggtagaaggattgaaagatgcacaaatgagggatctcttgtct
cctccaaccgataacagaccaggtcagatagacaaccgtagcaaattgaggaacatcata
gagcttcgtctagcaggactggacattacagatgccacactgcgcctgatgattcgacac
atgcctcttctttccaaactggacctgagttactgtaaccacgtgactgatcagtccatt
aacctgctcactgcagtgggtacatctaccagggattctctgtcagaaattaatttatca
gactgcaataatgttacagaccagtgcctgacttactttaaacgctgtggcaacatctgt
ctgattgacctcaggtactgcaagcaggtcaccaaggaaagctgcgaacagttcattgcc
gaaatgtcagtaattgtacagtttggacaaacagaagaaaagcttcttcaaaagattagc
taa
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integrated database retrieval system
