Rana temporaria (common frog): 120940899
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Entry
120940899 CDS
T07929
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtem03036
]
120940899 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120940899 (SMCHD1)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120940899 (SMCHD1)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120940899 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
DUF2659
Sec3_C_2
Motif
Other DBs
NCBI-GeneID:
120940899
NCBI-ProteinID:
XP_040209965
LinkDB
All DBs
Position
5:complement(297358327..297862900)
Genome browser
AA seq
2004 aa
AA seq
DB search
MAAASVSPLDQHGEGDPLLIVFLFDRRLEQSTCEEKSLAVRGGFVELRHDVCEAFGINSN
EKFVISTTNRTEVTVTDFNLIIKDGITLYLLNAIDQLLPSSTQERIDFLPHYDTLVKSGM
YEYYASEGQNPLPFALAELIDNSLSATAQNSGNRTIQIYLLFDETRGKPAVAVIDNGKGM
TSVQLKNWAVYRLSKFTRGTGNYSDEESYIRPPPVKRSLNSDISYFGVGGKQAVFFIGQS
TRIITKRSDSQDVHEFLISKEDFEKKEKNKESIYSSFIRNRKPGDYVHVQEDERYLRDLI
MDENAKDSFTTVLITGIQPVHIQYLKEIRHLWIRQLAHIYHYYIHGPKGNVLNNSSNKFN
SHIDIQINMFEKGKTTKTINLREICDDMQTLYINSASEIFEFKAVVESDGVIEGIIRYHP
FLYDKETYPDDPYFPTKNEDDEFDDDCIPLENEARGKRPIFECFWNGRLIPYTTIQHFDW
CAVPKKRGIIPVECYNRISGVLFTNDKFGVSTNKLTFLDLGSKLQDKNTLFTRILNGQEQ
RVKIDREFLTWLKNCHETYDKQIHFLGFKGIISRQDIASKRMQTPWAAYTSIEWDGKTYK
AGQLVKTLKTQPIIYGRILKFLLYGNHEGNIYSTGGEVLIALEPKEVHDETRSVPISKLD
RSANLAGIKKYMDEEMARFPDTLVVTWPEGDPVVENEERFAGAPIGAIRVEIFNKKGEAV
QKLPGASHGAAKKLLVELKVLLQSPSGEKDVISHISQHGGKWPYWFKKMENITKLGVYTL
KLQVVLNESNADKYAGKTLPCKKITFKIVEGKPFKFVLGTVDSTIRVGIPFNIPLNLEDE
FSHPTLPTPDLKPVLEASGLILDYEELNKIHPLVIKGVRAKGQVNNYQGMNFMLKVTLPG
LKGDTQTMNLKVLPGPPKLLNVKPSTDILIDNGSAVTFQVEVLDEEGNLTCQPKLIVQCK
FTGAPNLPTYTLDCSNTGSGVLTGPSIRVQNIKKLHLLKAKIEVSSCREIKTVEKNIKVQ
PSSNITKLYILSVDGEKAIQIKHKDEIEWIAGDTMQNLIFQMYDEGDREIFITPTIAERI
KVNWTPNVSKEKLVNGLLPDVEVSNSVNDVRYCQVTYHDDNVSLESAFTVKPLPDEPKYL
KCKLTGPSVIKMGEELKGEVELILTDQFGNQVRTLSPSCLDSLGISETSLDKSNIEMTFQ
ENTQSFIVKGIKFYNGPLEEKELCFAWRHFSTYLRLSLVAGPPAKIALVDWPESVTVVCG
KKLQKPLIVQLCDEWGNQAPEPNVKVTLVKDSHLKITGQSQQIKTDKEGRMNMGLLAFYA
PKAVYSLQCKASYHKSILESQPVKVKVMPDPDKPVFVSVKFDKDVDFTAGSVFPGKLCGN
VLSEDGEVIKNLSQANCSMKIWKAHSMGAKPPATATVFNCNKPRDGDKDDCFYFRDKMIP
ERVEKYCIQFMYMSDKSNVLYSEQFLIDVLPNTPVKLVPQPQPATPTVSNVKAKEGRTLV
KNLWLKTVDKHNNMAGANLSGKVIAKIICSEKGEKEIPLFESNTDTMEFPFNNGSADIPG
LVLAENSPGRDSTEYQVQFYLELHPVAPVPGEISPFYLPFMFYNDFKKQQEMAQLTKEKD
QLSKSVKAYRSLFDATNILLSEYKSQANEAKGKEVSLKNELKKKKIDLPMKDQEMDHIVQ
IIKQKQTQMQSLLNQPKRKCLLPPVPKDSDVIGKIAHLAYVEDDEAAKVISWHLASDMDC
VITQTTDAARRIYNETKGHQQVLPMDSIYQKNLPTWGRPLPHMVNGKKQFNSTGNPVFAR
DLLVFPDRKEECQKVFGMLLGDTILLDNLEAANEYRKRLVSFSYCPTLLTREGDRIRSNG
KFGGLQNKAPSLDKLRGTVFGAPLPKEYDILSLEIDLLQQYCAAVKRSQSVDKELKKQVQ
HLNSPDMQQKKKELDEQEIQLKNIEKKLVDAAAAACPKKPQRIQENVQRKLSVRILDLSM
YCLFPKKIVNQVFFLICLYLVWLQ
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcaagcgtaagtccgctggaccagcacggagaaggcgaccccctcctcatc
gtattcttgtttgaccgccgcttagagcagtctacgtgcgaggagaagagcctggctgtg
cgcggcggcttcgtggagctccgtcatgacgtgtgtgaggcctttgggatcaactcaaat
gagaagtttgtcatttcaacaacaaacagaacagaagtaactgtcacagactttaatctg
attataaaagatggcatcacgctttatcttctcaatgcaattgaccaactgcttccttca
tcaactcaagagagaattgatttcttacctcattatgataccctggtcaaaagtggaatg
tatgaatactatgctagtgaaggacaaaacccattgcctttcgctcttgcagagttgata
gacaattcactttcagcaacggctcaaaattcaggcaatcgaactatacagatatacctg
ctttttgatgaaactcgaggaaagcctgccgttgctgtcatagataatggaaaaggaatg
acttcagtgcaacttaaaaactgggcagtgtatcgtttgtcaaagtttacacgaggaact
ggcaattacagcgatgaagaaagttacatccgtccccccccagttaagcgcagtctcaac
agtgatatttcctattttggagtgggaggaaaacaagctgttttctttattggccagtct
actcgcattataaccaagagatcagattcacaagatgttcacgaatttttgatttccaaa
gaagattttgagaaaaaagaaaaaaataaggaatctatttacagtagctttattagaaac
agaaagccaggcgattatgttcatgtacaggaagatgaacgttacctgcgcgatctcatc
atggatgaaaatgctaaagatagcttcacaacagttctcattactggtatccagcctgtc
catatacagtacctgaaggaaattcgtcatctatggattaggcagttggcgcacatctac
cattattacatccatgggcctaaaggaaatgtgctgaataattccagcaataaatttaac
agccacattgacatacagatcaacatgtttgaaaaaggaaaaacaacaaagactattaac
ttaagagagatctgtgatgacatgcagacactgtatattaacagtgcttctgagatcttt
gagttcaaggctgtggttgaaagtgatggtgtaatagaaggaatcataaggtatcatcct
ttcttatacgacaaagaaacatatccagatgacccatactttcccacaaaaaatgaggat
gatgaatttgacgatgactgtataccactggagaatgaagctcgagggaaaaggccaatc
tttgaatgcttttggaatgggagacttattccttataccacaattcagcattttgattgg
tgcgctgtccctaaaaaaagaggaattattccagttgagtgctataataggatatctgga
gtgttatttacaaatgacaaatttggagtcagcacaaataaactgactttcttagatttg
ggatctaaactacaggacaaaaacacactttttacaaggatattaaatggacaggagcag
agagtaaaaattgatcgcgaatttttaacatggttaaaaaattgtcatgaaacatatgac
aaacaaatacattttttgggcttcaaaggtatcatttctcgtcaggacatagcttcaaaa
cgcatgcaaactccttgggcagcatatacatccatagaatgggatggaaagacctacaaa
gctggacaactggtaaaaactctcaaaacccagccaataatttatggaaggattttaaag
tttctcctttatggaaatcatgaagggaatatttattctacaggaggagaagttcttatt
gctttggaaccaaaagaggtgcatgatgaaacaagaagtgtgcccatttctaaacttgat
cgcagtgcaaatctggctggtatcaagaagtatatggatgaggaaatggcacgatttcct
gacactctggtagtgacatggcctgaaggagatccagtggtagaaaacgaggagaggttt
gctggagcacctataggggcaatacgagttgagatcttcaataagaagggggaggctgtg
cagaagctcccgggtgcaagtcatggagctgcaaagaaacttttggtggaactaaaggtt
ctgttgcaatcaccaagtggggaaaaagacgtaatttctcatatcagtcagcatggtgga
aagtggccctactggtttaaaaaaatggagaacataaccaagcttggtgtgtatacactg
aaactacaagttgtattaaatgaaagtaatgctgacaagtatgcaggaaaaactcttcca
tgtaaaaagattacctttaagattgtagagggtaaaccttttaaatttgttttgggtact
gtggattctacaattcgtgttggaattccattcaatatccccttaaatctcgaggatgaa
tttagtcacccaacgttgcccacaccagatctcaaaccagtcctggaagctagtggtctt
attctggattatgaagagctaaacaaaatacatcctttggtaataaagggagtgcgtgcc
aaagggcaagtgaacaactaccagggcatgaatttcatgctgaaagttacactgcctggc
ttaaagggagatactcaaaccatgaacttgaaggtgttgccaggtccacccaagctcctg
aatgttaagccgagtactgatattctaattgacaatggatcagctgttacttttcaggtt
gaagtgttagatgaggaaggaaatctaacatgtcagccaaagctaattgtacagtgtaag
tttacaggggcaccaaacctcccgacctacacgctggattgcagtaatacaggaagcggt
gttttgactggaccttccatcagagttcaaaacataaaaaagttacatttactgaaagcc
aaaattgaagtatctagttgcagagaaataaaaacagtggaaaaaaatattaaagttcag
ccaagtagtaatattacaaaactttatattttaagtgttgatggtgaaaaggcaattcaa
attaaacacaaggacgagatagagtggattgcaggtgataccatgcagaatcttattttt
caaatgtacgacgaaggagatagagaaattttcatcacacccacaattgctgaaagaata
aaggtgaactggacaccaaatgtttctaaggagaaattagtcaatgggcttttaccggat
gtagaggtgtcaaattcagttaatgatgttcgctactgccaggtcacctatcatgatgat
aatgtttcattggagagtgctttcacagtcaagcctctccctgacgagccaaaatatttg
aaatgcaagttaactggacctagtgttataaaaatgggagaagagctgaagggtgaagtt
gagttgatattgacagaccagtttggtaatcaggtccgcacattatcgccctcatgcctt
gattccctaggtatttctgaaactagtcttgacaaaagtaatatagaaatgacttttcag
gaaaatacacagtcttttattgtcaaaggaataaaattttataatggtcctctagaggaa
aaagagctttgctttgcgtggagacatttctcaacttatttaagattgagcttggttgct
ggtcctcccgctaaaattgccctggtagactggccagagtctgttacagttgtctgtggt
aaaaagttacaaaagcccctgattgtccagctttgtgatgaatggggaaaccaagctccg
gagccaaatgttaaggtcacattggtgaaggacagccatctcaagataactggccaatct
caacagataaaaacagataaagaaggtcgcatgaatatgggactgcttgcgttttatgca
ccaaaggctgtttattccttgcaatgtaaagcatcgtatcacaaaagtattctggaaagt
caaccagtcaaagttaaagtaatgccagaccctgataaaccagtctttgtttctgttaaa
tttgataaagatgtagattttacagctggaagtgtttttccaggtaaactttgtggtaat
gttctttctgaagatggagaagtcattaaaaacctcagtcaagctaactgctccatgaaa
atatggaaagctcattcaatgggggcaaaacctccagctactgcaactgtctttaattgc
aataagcctagagatggggacaaggatgactgcttctactttagggacaaaatgataccg
gagcgtgttgaaaagtattgcatccagtttatgtatatgtctgacaaatctaatgtacta
tacagtgaacagttcctaatagatgttctaccaaacacacctgtgaagttggtgccacag
cctcagcctgctacacctacagtatccaatgtaaaggcaaaggagggccgcactctggtc
aagaatctgtggctcaagactgtggataagcacaataatatggccggtgccaatttaagt
ggtaaagtcattgcgaagataatttgttctgaaaagggtgagaaagagataccactgttc
gagtctaatactgacaccatggagtttccatttaataatggatctgctgacatccctggg
cttgttcttgctgaaaatagccctgggagagacagcactgaatatcaagttcagttctat
ctcgagttacatccagtagcaccagtaccaggggaaatttcaccgttttatcttcctttt
atgttttacaatgatttcaaaaaacaacaagagatggcacagcttactaaagagaaggac
cagctgagcaagtctgttaaggcttatagaagcctgtttgatgcaacaaatatacttctc
agcgaatataagagtcaagcaaatgaagccaaagggaaagaagtgtccctaaagaatgaa
ttgaagaaaaaaaagatcgacttacccatgaaagaccaggagatggaccacatcgttcaa
attattaaacaaaagcagacacagatgcaaagtctactgaatcagccaaagaggaaatgt
ttgcttccccctgttccaaaagacagcgatgtcataggaaagatcgcccatttggcatat
gtagaagatgatgaagcagcaaaagtaatctcatggcatttagctagtgatatggactgt
gtgattacacaaaccacagatgcagctcgtcgtatctacaatgagacaaaaggccaccaa
caggttcttccaatggactcaatatatcagaagaatctaccaacatggggaaggcctttg
ccacacatggttaatggaaagaaacaattcaattcaacaggaaatccagtgttcgctaga
gatctcttggtattccctgaccgcaaagaagagtgtcaaaaagtttttggaatgctgtta
ggagatacaatacttttggataatctagaagctgctaatgaatacagaaaacggctggtg
tccttttcatactgtccaacactattgacaagagaaggagatcgaatacgtagcaatgga
aagtttgggggcttacagaataaggccccttcactagacaaactcagaggaaccgttttt
ggagcaccattacctaaagaatatgacatactttctttggaaattgatttgttacagcag
tattgtgcagcagtgaaaagatcacagagtgtagataaagaacttaagaagcaggtccaa
catcttaactcaccagatatgcaacagaagaagaaggagttggatgaacaggagatacag
ctaaagaatattgagaaaaagctggttgatgcagcagcagcagcatgtcccaaaaagcca
cagcgtatccaagaaaatgtgcagaggaaattatctgtccggatccttgatttatctatg
tattgtttatttcccaaaaaaattgttaatcaagttttttttttaatctgcctctatctt
gtttggctgcagtag
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integrated database retrieval system
