Rana temporaria (common frog): 120945041
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Entry
120945041 CDS
T07929
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03018
RNA degradation
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120945041 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
120945041 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120945041 (LSM3)
03041 Spliceosome [BR:
rtem03041
]
120945041 (LSM3)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120945041 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
120945041 (LSM3)
Spliceosome [BR:
rtem03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120945041 (LSM3)
Complex C
U2 snRNP components
120945041 (LSM3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Motif
Other DBs
NCBI-GeneID:
120945041
NCBI-ProteinID:
XP_040214816
LinkDB
All DBs
Position
7:complement(11166177..11172863)
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AA seq
101 aa
AA seq
DB search
MADDGEQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETV
TTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatggagagcagccgaccacaaacacggtggaggagcctctggacttgatc
cggctgagcttggatgaacggatctatgtgaagatgaggaacgacagagaactccggggg
aggttacatgcctatgatcagcacttgaatatgatcctgggagatgtggaggagacggtg
accaccatcgaaattgatgaggaaacctatgaggagatttataagtctacgaagagaaac
atccccatgctttttgtccgcggtgatggcgttgtgctcgtagctcctccattaagagtt
ggatga
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