Rhodanobacter thiooxydans: LRK53_11560
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Entry
LRK53_11560 CDS
T08065
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03030
DNA replication
rth03410
Base excision repair
rth03420
Nucleotide excision repair
rth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRK53_11560 (ligA)
03410 Base excision repair
LRK53_11560 (ligA)
03420 Nucleotide excision repair
LRK53_11560 (ligA)
03430 Mismatch repair
LRK53_11560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rth03032
]
LRK53_11560 (ligA)
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_11560 (ligA)
Enzymes [BR:
rth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRK53_11560 (ligA)
DNA replication proteins [BR:
rth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRK53_11560 (ligA)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRK53_11560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRK53_11560 (ligA)
MMR (mismatch excision repair)
DNA ligase
LRK53_11560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRK53_11560 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Zn_ribbon_PADR1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UJJ53618
LinkDB
All DBs
Position
complement(2571023..2573434)
Genome browser
AA seq
803 aa
AA seq
DB search
MTERPAPAETVARAAALRAQIEQANYRYHVLDDPDITDAEYDRLMRELEALEAEYPVLAT
ADSPTRKVGARASGGFAEVRHAIPMLSLGNAFEQDGASDRERFREVAEFERRIEQTTKRS
EPVFSVEPKLDGLAISLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLKLRGKGWPD
VLEVRGEVIMLHKDFEAFNEHARKHGEKPLANPRNGAAGSLRQLDPAVTAKRRLSFFAYA
VGEVEGGELPPTHSATLRQLREWGFPVSPEVDTARGFDGLIAYYHRIGGKRDSLPYDIDG
VVYKLDDYAGQRKMGFVSRAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLAPV
QVAGVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMIELRPPHTHPWHMPA
RCPVCGSELLREEGEAAYRCSGGLICAAQRKEALIHFASRRAMDIDGLGERFAEALVELD
IVHSPADLYGLGVDDFVEMKRRIDERKPAPAEAGGTAPETVKAGKVATKWAENLVAGIEA
SKHTTLARFLYALGIMHIGESTAKTLAAWLGRLEFVRSTPAAVLRVLPDIGSEVATSIAG
FFAQAGNEQVVDALLAAGITFSDEGAPSPLLRARLDLGVLLGMADINKLGPKSCALLAQH
FPTLDQLLSGGPAHWITAGVPQAAATSLQNHLADPVALARLREAEAAMQRLLRAIPHSAK
VATAPLQGQTFVLTGTLASLSRDEAKERLEALGAKVSGSVSRKTSVVVAGEAAGSKLDKA
QELGVPVWDEAQLLGLFGKHEAA
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacgcccggccccggccgagactgtcgcccgcgccgccgcgctgcgggcgcag
atcgagcaggccaattaccgctatcacgtgctcgacgacccggacatcaccgacgccgag
tacgaccggctgatgcgcgagctggaggcgctggaggccgaataccccgtgctggccacg
gccgattcgccgacgcgcaaggtcggcgcgcgtgccagcggtggctttgccgaggtgcgc
catgcgatcccgatgctgtcgctgggcaacgcgttcgagcaggacggcgccagcgatcgc
gaacgcttccgcgaggtggccgagttcgagcggcgcatcgaacagaccacgaaacggagc
gaacccgttttctcggtggaacccaagctcgacggcctggcgatcagcctgcgctacgag
cacggcgtgttcgtgcagggcgccacccgcggcgacggcgagaccggcgaagacgtgacc
gccaacctgcgcacggtgcgggcgatcccgttgaaattgcgcggcaagggctggcccgac
gtgctcgaagtgcgcggtgaagtgatcatgctgcacaaggatttcgaggcgttcaacgaa
cacgcgcgcaagcacggtgagaagccgctggcgaacccgcgcaacggcgcggccggttcg
ctgcgccagctcgacccggcggtcaccgcaaaacggcggctgagtttcttcgcctacgcg
gtgggcgaggtcgagggcggcgagctgccgccgacccattcggccacgctgcgccagctg
cgcgagtggggcttcccggtatcgccggaagtggacaccgcgcgcggcttcgacgggctg
atcgcctactaccaccgcatcggcggcaagcgcgacagcctgccgtacgacatcgacggc
gtggtctacaagctggacgactacgccggccagcgcaagatgggcttcgtctcccgtgcg
ccgcgctgggccatcgcgcacaagttcccagcacaggagcagaccaccacggtcgaggca
atcgagatccagatcggccgcaccggcgccgccaccccggtggcgcggctggcgccggtg
caggtggctggcgtcaccgtcaccaacgccaccttgcacaacgccgaccaggtcgcccgg
ctggacgtgcgcgtgggcgacacggtgatcgtgcgccgcgccggcgacgtgatcccggaa
gtggtgcgcgtgatgattgagctgcggccgccgcatacgcatccctggcacatgcccgcg
cgctgcccggtgtgcggctcggaactgttgcgcgaggaaggcgaggcggcttatcgctgc
tccggcggactgatctgcgccgcgcagcgcaaggaggcgctgatccacttcgcctcgcgc
cgcgccatggacatcgatggcctgggtgaacgcttcgccgaggcgctggtggagctggac
atcgtgcactcgccggccgacctgtacggcctgggcgtggacgatttcgtcgagatgaag
cggcgcatcgacgagcggaagcctgccccagcggaggctgggggcaccgcgccggaaacg
gtgaaggccggcaaggtggcgaccaagtgggcggaaaacctggtggccgggatcgaggcc
agcaagcacaccacgctggcgcgcttcctgtacgcgctgggcatcatgcacatcggcgag
agcacggcgaagacgctggcggcgtggctgggccggctggagttcgtgcgcagcacaccg
gcggcggtgctgcgcgtgctgccggatatcggcagcgaagtggccacctcgatcgccggc
ttttttgcgcaagcgggcaacgagcaggtggtcgacgcgctgctcgccgccggcatcacc
ttcagcgacgagggcgcgccgtcgccgctgctgcgcgcgcggctggacctcggcgtgttg
ctgggcatggccgacatcaacaagctcggccccaagagctgcgcgctgctggcgcaacac
ttccccacgctcgaccagttgctgtccggcgggccggcgcactggatcaccgctggcgtg
ccgcaggccgcggcgaccagcctgcaaaaccatctcgccgacccggtcgccctggcccgg
ttgcgcgaggccgaggcggcgatgcagcgcctgctcagggcgatcccgcactcggcgaaa
gtggcgacggcaccgctgcaagggcagaccttcgtgctcaccggtacgctggcgtcgctc
agccgcgacgaggcgaaagagcgactcgaagcgttgggcgccaaggtgtccggttcggtg
tcgaggaagaccagcgtggtggtcgctggcgaggcggccggttccaagctggacaaggcg
caggagcttggcgtgccggtgtgggacgaggcgcagctgctgggcctgttcggcaagcac
gaggcggcctga
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integrated database retrieval system
