Rhodanobacter thiooxydans: LRK53_16270
Help
Entry
LRK53_16270 CDS
T08065
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth00300
Lysine biosynthesis
rth00550
Peptidoglycan biosynthesis
rth01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LRK53_16270
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRK53_16270
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
LRK53_16270
Enzymes [BR:
rth01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
LRK53_16270
Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
Precursor biosynthesis
Amino acid ligase
LRK53_16270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
UJJ54491
LinkDB
All DBs
Position
complement(3582897..3584459)
Genome browser
AA seq
520 aa
AA seq
DB search
MSSGHLDQLLLGIADAPIAAAPDVGRIVVSGLSLDSRRVQRGDAFFALRGSHAHGITFAA
GAVQRGARVVLAEAPAPGEFLPLPAGADAEGGRSRLPQAVGEVPVLWIDGLHGQVSEIAA
RFYRRPSESMRMVGVTGTNGKTSCVQLLAQALTLLGHRAASIGTLGAGVHGQLHEGERTT
PDAVTVQALLAEFRDADVSHVAMEVSSHALEQGRVAAVDYEVAAFTNLTRDHLDYHGSMQ
AYGAAKARLFAWPGLRSAAINIDDAFGRELAGQLPAGVERLRFSMAGDEEAEVAASAIVS
STEGLAFLLRTPWGTRAVRSQLIGRFNVANLLAVVACLGALGEPFARIVEVVAQLQPVNG
RMSRLGGVQGQPLVVVDYAHTPDALEQALTAVRAHCTGKLICVFGCGGERDAGKRPLMGA
IAARLADVAIVTDDNPRGEDGDAIVAQIVAGMAAARAMAVERDRAVAIADALQLARAGDA
VLIAGKGHETYQEGAAGKRPFDDMAAARAVLERIGREARP
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcggccacctcgaccagttgctgctgggcatcgccgacgcgccgatcgccgcg
gcgccggacgtcggccgcatcgtggtgtccggcctgagcctggattcgcgccgggtgcag
cgcggcgacgcgttcttcgccttgcgcggcagccacgcccacggcatcaccttcgccgcc
ggcgccgtgcagcgtggtgcccgcgtggtgctggcggaagcgcccgcgccaggtgaattc
ctgcccctgcctgcaggggcagatgccgaaggcggaaggagtcgactgccgcaggcagtc
ggcgaggttcccgtgctgtggatcgacggcctgcacggccaggtcagcgagatcgccgcg
cgcttctaccgccgccccagcgagtcgatgcgcatggtcggcgtcactggcaccaacggc
aagacctcgtgcgtgcagctgctggcgcaggcgctgaccctgctcggccaccgcgcggcg
tcgatcggcacgctcggcgccggcgtgcatggccagttgcacgaaggcgagcgcaccacg
cccgacgcggtgacggtgcaggcgctgctggcggaattccgcgacgcggatgtcagccac
gtcgcgatggaggtctcctcgcacgcgctggagcagggccgcgtggcggcggtggattac
gaggtggccgcgttcaccaacctcacccgcgaccacctggactaccacggcagcatgcag
gcctacggcgcggcgaaggccaggctgtttgcctggccgggcctgcgcagcgcggcgatc
aacatcgacgacgcgttcggtcgcgagctggccgggcagttgcccgccggcgtcgagcgg
ctgcgtttcagcatggccggcgacgaagaggcggaagtcgccgccagtgcgatcgtcagc
tcgaccgaagggctggcgttcctgctgcgcacgccgtggggcacgcgggcggtgcgcagc
cagctgatcggccgcttcaatgtggccaacctgctggccgtggtggcctgcctcggcgcg
ctgggcgagccgttcgcgcgcatcgtcgaggtggtcgcgcagctgcagccggtgaacgga
cgcatgagccggctcggcggcgtgcagggccagccgctggtggtggtcgactatgcgcac
acgccggatgcgctggagcaggcgctgaccgcggtgcgcgcgcattgcaccggcaagctg
atctgcgtgttcggctgcggcggcgagcgcgatgccggcaagcgtccgctgatgggcgcg
atcgcggcgcggctggccgacgtggccatcgtcaccgacgacaacccgcgtggcgaggac
ggcgacgcgatcgtggcgcagatcgtcgccggcatggcggcggcgcgcgcgatggcggtc
gagcgcgaccgggcggtggcgatcgccgacgcgctgcagctggcgcgtgccggtgacgcg
gtgctgatcgccggcaagggccacgaaacctaccaggagggcgccgccggcaagcgtccg
ttcgacgatatggcggcggcgcgcgcagtgctggagcggatcggcagggaggcacgcccg
tga
DBGET
integrated database retrieval system
