Remersonia thermophila: 98123359
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Entry
98123359 CDS
T10833
Symbol
VTJ83DRAFT_2444
Name
(RefSeq) hypothetical protein
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98123359 (VTJ83DRAFT_2444)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98123359 (VTJ83DRAFT_2444)
03041 Spliceosome [BR:
rthe03041
]
98123359 (VTJ83DRAFT_2444)
03032 DNA replication proteins [BR:
rthe03032
]
98123359 (VTJ83DRAFT_2444)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
98123359 (VTJ83DRAFT_2444)
Spliceosome [BR:
rthe03041
]
Complex A
U1 snRNP components
Sm proteins
98123359 (VTJ83DRAFT_2444)
U2 snRNP components
98123359 (VTJ83DRAFT_2444)
Complex B
U1 snRNP components
98123359 (VTJ83DRAFT_2444)
U4/U6.U5 tri-snRNP components
98123359 (VTJ83DRAFT_2444)
Complex C
U2 snRNP components
98123359 (VTJ83DRAFT_2444)
DNA replication proteins [BR:
rthe03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
98123359 (VTJ83DRAFT_2444)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
98123359
NCBI-ProteinID:
XP_070868984
JGI:
Remth1_2444
LinkDB
All DBs
Position
2:join(3589982..3590011,3590118..3590126,3590185..3590238,3590298..3590697,3590762..3590889)
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AA seq
206 aa
AA seq
DB search
MSAQNKQGKMAGYINYRMRVTLNDGRQMVGQMLAFDKHMNLVLADTEEFRRIRRKNTKTA
PGAAATITEQEEKRTLGLTIIRGAQIVSLSVESPPPADPSARLGKTTTAGLTTALAAGPG
VARPAGRGAAAPISLAGPAAGVGGAVPPPFPPFPGAPGFPGRGGPPPPGFGGAFPPPAGF
PGAPGFPPGFPPAGAPPPGFNPPPRR
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcaaaacaagcagggcaagatggccggttacatcaactaccggatgcgcgtt
accctcaacgacgggcgccagatggtcggccagatgctcgccttcgacaagcacatgaac
ctcgtcctcgccgacacggaggagttccgccgcattcgtcgcaagaacaccaagaccgcc
ccgggcgctgccgcgaccatcacggagcaggaggagaagcgcaccctcggcctcaccatc
atccgcggtgcccagatcgtctcgctctcggttgagtcgcccccgccggccgaccccagc
gcccggctgggcaagacgacgaccgccggcctcacgacggccctggcggccggacccggc
gttgcgcgtcccgccggccgcggtgcggctgctccgatatctctggccggccctgctgct
ggcgtcggcggtgccgttcccccacctttcccgcccttccctggcgctcctggctttcct
ggccgcggtggacccccgccgcccggattcggcggtgcgtttccgccgccggccggcttc
ccgggagctcccggcttcccgcctggcttcccgccggccggtgctccgccgcctgggttc
aacccccctcctcggagataa
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