Remersonia thermophila: 98127484
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Entry
98127484 CDS
T10833
Symbol
VTJ83DRAFT_616
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98127484 (VTJ83DRAFT_616)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rthe03041
]
98127484 (VTJ83DRAFT_616)
Spliceosome [BR:
rthe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
98127484 (VTJ83DRAFT_616)
Complex C
U5 SnRNP specific factors
98127484 (VTJ83DRAFT_616)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
Ras
Motif
Other DBs
NCBI-GeneID:
98127484
NCBI-ProteinID:
XP_070869969
JGI:
Remth1_616
LinkDB
All DBs
Position
1:complement(join(2215818..2216383,2216687..2216774,2216844..2217835,2217893..2219044,2219109..2219271))
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AA seq
986 aa
AA seq
DB search
MDDDLYDEFGNFIGEEVEASEEESEHGVDIGNYVDDEYPEAAPEAPPEERMDIDDEGPRN
AVVLYEDKQYYPTAAQVYGEGVETLVQEEDAQPLTQPIVAPVEQKKFSIEEADLPPVHFD
RTFMADLMNFPEQIRNVAFAGHLHHGKTAFVDMLVLETHAISDRLDKRTGKKRDEQLRYT
DVHVIERDRGVSIKAAPMSVVLQSTKGKSHLFNILDTPGHVDFVDEVAASFRLVDGVCLV
VDVVEGVQVNTEQIIKHAVLEDIPLTLIVNKMDRLILELKLPPNDAYYKLRHVIEEVNTV
IEKTLPGRGAEKRISPEKGNVLFACTSMGWCFTLASFAKMYSDSFGGVSVDEFARRLWGD
VYFNPQKRNFTRKPLEKEAKRSFINFILEPIYKLFSHTISESPEDLKGTLEKLGIQLKPS
QLKSDAKVLLKLVCEQFFGPSTAFVDMVCQHIPSPVEAAEQKLSRYYTGPLDTKVAESMK
KCDQDGPLVVHVTKLFSTTDAKSFNSFGRVMSGIARPGAEVRVLGEGYSLDDEEDMALAR
ITDVFIAETRYNIPTDGVPAGNWVLLGGVDNSIVKTATIVDKKFEDGEDAYIFKPLSHFT
ESVLKVAVEPINPSELPKMLDGIRKINKSYPLVATKVEESGEHIIIGTGELYMDCVLHDL
RRLYADMEIRVSDPVVRFCETVQDMSATKCYAVTPNKKNTITMAAEPLDDGIAQDIESGA
VRIRDPARKTAKFFEEKYGWDMLAARSIWAFGPDEMGPNILQDDTLPTEVDKKRLNTVKE
SIRQGFSWATREGPLCEEPIRNTKFRLIDVSLAQEAIFRGGGQIIPTTRRACYSSFLMAS
PRLMEPVYSVSMTGPQESVGTVYNIMSRRRGHVLSDGPIAGTPLYRINGLMPVIDSFGFE
TDLRINTPGQAMVSLVFDHWSIIPGDPLDREMVTRPLQMATPLATARDFVLKTRRRKGLS
EDVTVAKFLEPEFYQSLVEGGTLDGV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatctgtacgacgagtttggcaacttcatcggcgaggaagtcgaggcgtcc
gaggaagaatccgagcatggcgtcgacatcggcaactatgtcgacgacgaataccccgag
gcggctccagaagctccgccagaggagcgcatggacatagatgatgagggtcccaggaac
gctgtcgttctctacgaagacaagcagtactacccaaccgccgcccaggtatacggggaa
ggggtcgagacgttggtgcaggaggaggatgcgcaaccattgacgcagcccatcgtcgcg
cccgtcgagcaaaagaagttcagcatcgaggaggccgacctgccgcccgtccacttcgat
cgcaccttcatggccgatcttatgaacttccccgaacagatccgcaatgtcgcgttcgcc
gggcacctgcaccacggcaagaccgccttcgtcgatatgctggttctcgagacccatgcc
atctccgacaggttggacaagcggacagggaagaagcgcgacgagcagctccggtacacc
gacgttcatgtcatcgagcgggaccggggggtgtcgatcaaggccgcccccatgagcgtc
gtgctccagagcaccaagggcaagtcgcacctcttcaacatcctcgacacgccagggcat
gtggactttgtcgacgaggtggccgcgtctttccgcctggtcgacggcgtgtgcttggtg
gtggacgtggtggagggcgtccaggtcaacacggagcagatcatcaagcacgccgtcctc
gaagacatcccgctcacgctgatcgtcaacaagatggaccgcctgattctggagctgaag
ctgccgcccaacgatgcctactacaagctgaggcacgtcatcgaggaggtcaacacggtc
atcgagaagacccttccagggaggggcgccgagaagaggataagccccgaaaagggcaac
gtcctgtttgcctgcacgtccatggggtggtgcttcacgctggcttccttcgcaaagatg
tactcggacagcttcgggggcgtcagcgtcgacgagtttgcgcgcaggttatggggcgat
gtctacttcaacccgcagaagcgcaacttcaccaggaaacccctcgagaaagaggccaag
aggtccttcatcaacttcatcctcgagccgatatacaagctcttctcccacaccatcagc
gagagccccgaagatctgaagggcacactggagaagctgggcatccagctcaagccgtcc
cagctcaaatcagacgccaaggtgctcctcaagctggtgtgcgagcagttttttgggccg
tcgactgcgttcgtggatatggtctgccaacacattccgtcgcccgtcgaggccgcagag
cagaagctctcgcgatactacaccgggccgctcgacaccaaggtggccgagtcgatgaag
aagtgcgaccaagacggcccgttggtggtgcacgtcaccaagctcttcagcaccaccgac
gccaagagcttcaactcgtttggacgggtcatgagcggcatcgcacggccaggcgccgag
gtccgtgtgcttggtgagggctactctctggacgacgaagaggacatggcgttggccagg
atcaccgacgtcttcatcgccgagacgagatacaacatcccgaccgacggcgtgccggcc
ggcaactgggtgctgctcggcggcgtcgataactcgatcgtcaagacggccaccatcgtc
gacaagaagtttgaggacggcgaggatgcctacatcttcaagcctctatcccacttcacc
gagtctgttctcaaggttgccgttgagcccatcaatccatccgagctgccaaagatgctt
gatggcatccgcaagatcaacaagagctaccctcttgtcgccaccaaggttgaagagtcc
ggcgagcacatcatcatcggcaccggcgagctgtacatggactgcgtgctccacgacctg
cgtcgcctctacgccgatatggaaatcagggtgtcggacccggtcgtccggttctgcgag
acggtgcaagacatgtcggccaccaagtgctacgccgttacgcccaacaagaagaacacc
atcaccatggccgccgagccgctcgatgatggcatcgcccaggacattgagtcgggcgct
gtcaggatacgcgaccccgcgcggaagacggccaagttcttcgaggagaagtatggctgg
gatatgctcgcggcgcggagcatctgggccttcggccctgacgaaatggggcccaacatt
ttgcaggacgatacccttccgaccgaggtcgacaagaagcggttaaacacggtcaaggag
tcgattcgccaggggttcagttgggccacccgcgaaggaccactgtgcgaagagcccatc
cgcaacaccaagttccggctcatcgacgtttcgcttgcccaagaagccatcttccgcggc
ggtggccagatcatccccacgacgcggcgggcatgctactcgtcgttcctgatggcgtct
ccgcgcctgatggagcccgtctactcggtctccatgaccggcccgcaagagtcggtcggc
accgtctacaacatcatgtcgcggcgccgcgggcacgtgctctcggacggccccatcgcg
gggaccccgctgtaccgcatcaacggcctcatgcccgtcattgatagcttcgggttcgag
acagacctgcgcatcaacacccccggccaggcgatggtgagccttgtgtttgaccactgg
agcatcatccccggcgatcctctcgatcgcgagatggtcacgcggccgctgcagatggcg
acgcctctggcgacggcaagagactttgtgctcaagactcgccggaggaagggcctgagc
gaggacgtcacggtggccaagtttttggagccggagttttaccagagcttggtcgaggga
ggtacgctggatggggtgtga
DBGET
integrated database retrieval system
