KEGG   Remersonia thermophila: 98129198
Entry
98129198          CDS       T10833                                 
Symbol
VTJ83DRAFT_864
Name
(RefSeq) hypothetical protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
rthe  Remersonia thermophila
Pathway
rthe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    98129198 (VTJ83DRAFT_864)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rthe03400]
    98129198 (VTJ83DRAFT_864)
Enzymes [BR:rthe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     98129198 (VTJ83DRAFT_864)
DNA repair and recombination proteins [BR:rthe03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     98129198 (VTJ83DRAFT_864)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 RNA_ligase DNA_ligase_A_C BRCT DNA_ligase_IV Phage_min_cap2
Other DBs
NCBI-GeneID: 98129198
NCBI-ProteinID: XP_070870217
JGI: Remth1_864
LinkDB
Position
1:complement(join(3069865..3072796,3072856..3072959))
AA seq 1011 aa
MSRFKRAKSPDVDAIEEDEKQYGSGPLSLEELDELFPNRPRNHSKTFLFSDLHRNLFNTL
IECKPATAKPTGFRGARGRPGGGKVSYHEQRRHVIERFMSRWRAEVGPDFYPAMRLILPD
KDRDRGVYGLKENTIGKLLVKVMKIDRNSDDGYALMHWKLPGADRGPGGAGAWSAGDFAG
RCYEVVSKRQMRTEPGDFTIADVNVMLDRLAAASGEAEQLPIFEEFYQGMNAEELMWLVR
IILKEMKVGATERTFLGLWHPDAEALFSVSSSLRRVCWELYDPEFRLEHQETGITLMSCF
QPQLAQFQMTSTFSKLVSYLGVTEENPEFWIEEKLDGERMQMHMQEDDNVPGGFKFAFWS
RKAKDYTYLYGSGLEDEKSALTRHLKNAFDSGVRNLILDGEMITWDPEVDKMVPFGTLKT
AALEQQKNPFNSGPRPLYRVFDILFLNDKSLTDYALADRRRALERAVKGVKRRLEIHPYL
KATSADEIEPHLRTVVAEASEGLVLKNPRSRYQLNSRNNDWIKVKPDYMSEFGESIDCVV
IGGYWGSGRRGGTLSSFLCGVRVSENFVRSGAAASGEKCLSFCKVGGGFKVEDYAEIRHH
TEGKWRDWDPASPPSEFIELGGGERLQHERPDVWIRPSESVVISVKAASFAPSDQFAMGW
TLRFPRFRKLRLDKAWDAGMDVDEFEALRNRMKQEEKERKTMEMESRRRHPAKRQKRELV
IAGSAAAADEAPRFLSDAKPRSRLFEGLDFCVLSETLRPRKMSKPNLEKLLKVHGGHIYQ
TADKGSGMIILADKNVVRVASLKKAGGADVIRPKWVFDCLEQEAGAGFLLPFEEGHLLLA
TEATREAAQESTDPYGDSYARDVGVDELRGILNSMELPEERAAGFDVDGFLDQLEEHGRS
FDDLRSFLFRRCRVHFALAGGISEARSLRLKNLVRFGSGKVADDLDDRNITHVVVVGGGD
DSAASSEKVVAAEVRYRVSGRRAVPRVVSARWIEDCWKEGTLVDEEEYTPS
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgtcgcgattcaagcgcgccaagtcgcccgacgttgatgcgatcgaggaagatgagaaa
cagtacggcagcggcccgctcagccttgaagagctcgatgaactctttcccaaccgtccc
cgcaatcactccaagaccttcctgttctctgaccttcaccgcaacctcttcaacactctg
atcgaatgcaagcctgcaacagccaagcctactggttttcgaggcgctcgcggtcgcccc
ggcggcggcaaggtttcgtaccatgagcagcgccgccacgtcatcgagcgcttcatgtct
cgatggcgcgccgaggtcggcccggacttttacccagccatgaggctgattctccccgac
aaggaccgcgaccgcggcgtctacggcctgaaagagaacaccatcggcaaattgttggtc
aaagtcatgaagatcgaccgcaattcggacgacggctatgccctgatgcactggaagctg
cccggagcagataggggtcccggaggcgcgggcgcctggagcgccggcgactttgcgggc
cggtgttacgaggttgttagcaaacgccagatgcgcaccgagccgggcgatttcaccatc
gccgatgtgaacgtcatgctggaccggctggcagccgcgagcggggaggccgagcagctg
cccatctttgaggagttttaccagggcatgaacgccgaggagctcatgtggctggtgcgc
atcatcctcaaggaaatgaaggtgggcgccacggagcgcacctttctgggcctgtggcat
cccgacgccgaagccctgttcagcgtctcgtcgagcctgcggcgcgtgtgctgggagctg
tacgacccggagttccgcctcgagcaccaggagaccggcatcaccctcatgtcatgcttt
cagccgcagttggcgcagttccagatgaccagcaccttctcgaaactggtttcctatctg
ggcgtcactgaagagaaccccgagttttggatcgaggagaagctcgacggcgagcgtatg
cagatgcacatgcaggaggatgacaacgttcccggcggattcaagtttgccttttggtcg
cggaaagccaaggattatacctacctgtacggaagcggcctggaggacgagaagtcagct
ctcacgcgccacctgaagaacgccttcgactcgggcgtgcgcaacttgattctcgacggc
gagatgatcacctgggatccagaggtggacaagatggtgccgttcggcacgctcaagacg
gccgccctggagcagcaaaagaacccgttcaactcgggcccgcgcccgctctaccgcgtt
ttcgacatccttttcctcaacgacaagtccctgaccgactacgctctcgccgaccggcgc
agggcgctggagcgcgcggtcaagggtgtgaagcgccgcctcgagatccacccctacctc
aaggcgacgtcggccgacgagatcgagccgcacctgcgcacggtcgtcgccgaggcgtcc
gaaggtctcgtcctcaagaacccgcggtccagataccagctcaacagccgcaacaacgac
tggatcaaggtcaagcccgactacatgtccgagtttggcgagtcgatcgactgcgtcgtg
atcggcgggtactggggctccggccggcgcggcggcacgctgtcgagcttcctgtgcggc
gtgcgcgtcagcgagaactttgtgcgctccggcgccgccgccagcggcgagaagtgcctg
tccttctgcaaggtcggcggcggcttcaaggtcgaagactacgccgagatacgccaccac
accgagggcaagtggcgtgactgggaccccgcgagccctccgtccgagttcattgagctc
ggcggcggcgagcggctgcagcacgagcggcccgacgtgtggatccgcccgagcgagtcg
gtcgtgatatcagtcaaggccgcgtcgtttgcgccctcggaccagttcgccatgggctgg
accctgcggttcccacggttccgcaagctgcgcctcgacaaggcgtgggacgcgggcatg
gacgtggacgagtttgaggccctgcgcaaccgcatgaagcaggaggagaaggagcgcaag
accatggagatggaaagccgccgccgccacccggccaagcggcagaagcgcgagctggtc
atcgccggatccgcggcggccgccgacgaggcacccaggttcttatcggatgcgaagccc
cggagccgtctgtttgagggcctcgacttttgcgtcctgtcggagaccctccggccgcgc
aagatgagcaagccgaacctggagaagctgctcaaggtgcacggcgggcacatctaccag
acggccgacaaggggtctggcatgatcatcttggctgacaagaacgtggtcagggtagcg
agcctgaagaaggccggcggcgccgacgtgatccggcccaagtgggtgtttgactgcctg
gagcaagaggcgggcgccgggttcctgctgccgttcgaggagggccacctgctccttgcg
accgaggccacgcgggaggcggcgcaagagagcacggatccgtacggcgatagctatgct
cgcgatgtgggtgtcgacgagcttcgtgggattctcaacagcatggagcttccggaggag
agggctgccgggtttgacgtcgacgggttccttgaccagctggaggagcacggccgcagc
tttgacgatctcagaagcttcttgttccggcgctgccgcgtgcattttgccctggccggg
gggatatccgaggcgaggtcgctgcggcttaagaacctcgtgcggtttgggagcgggaag
gttgcggatgatttggatgaccggaacatcacgcacgtggtggtggtcggcggtggtgac
gatagcgccgcctcgtcggagaaggtggtcgccgccgaggtgagatacagggtcagcggg
cgaagagctgtgccccgggtagtatcggcgcgctggattgaagactgctggaaggagggg
accttggtggacgaggaggagtatacgccgagctga

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