Rufibacter tibetensis: DC20_17175
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Entry
DC20_17175 CDS
T04099
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03030
DNA replication
rti03410
Base excision repair
rti03420
Nucleotide excision repair
rti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DC20_17175
03410 Base excision repair
DC20_17175
03420 Nucleotide excision repair
DC20_17175
03430 Mismatch repair
DC20_17175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rti03032
]
DC20_17175
03400 DNA repair and recombination proteins [BR:
rti03400
]
DC20_17175
Enzymes [BR:
rti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DC20_17175
DNA replication proteins [BR:
rti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DC20_17175
DNA repair and recombination proteins [BR:
rti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DC20_17175
NER (nucleotide excision repair)
GGR (global genome repair) factors
DC20_17175
MMR (mismatch excision repair)
DNA ligase
DC20_17175
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DC20_17175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ALJ00386
UniProt:
A0A0P0CUR4
LinkDB
All DBs
Position
complement(4208972..4211023)
Genome browser
AA seq
683 aa
AA seq
DB search
MPEQNLEARILELTKRLNYLNYQYYQNSVSEVSDYEFDQMLLELQKLEEQHPQFKSQNSP
TQRVGGTITKNFPTVKHKYPMLSLGNTYSEDEVREFDTRVRKVTGDHVEYVCELKFDGVA
MSLTYTNGALTAGVTRGDGTRGDDITPNVRTIRSIPLHLHGEDVPAEVEVRGEVFMPFSV
FEELNKEREEIGEALMANPRNATSGTLKLQDSKEVARRRLSMFAYALLSTPTLFESHSES
LEALQRWGLNVSPTWRKCSTIEEVLDFIHEWETIRFELPIATDGIVVKVNSYAQQEELGY
TAKSPRWAMAYKYKAMEAVTDLLGIEYNVGRTGAVTPVALMKPVLLAGTTVKRASLHNAN
EIERLGLMIGDKVVVEKGGEIIPKVTAVKTELRPENAEAIVYPTICPACTTPLVRTEGEA
NHYCPNEKGCPPQVKGKLEHFISRKAMNIMSLGEGKIELLAEQGLVTSPDHLYDLTYDTL
FGLKKTFVNEETGKSRVVTFQKTTVENILKALEKSKEAPFDRVLFALGIRFVGNTVAQKL
AQHFRNIDALRAATEEELIAVPEIGGRIAASVREYFQDLANVHLVERLKAHGLQLDLGEL
AVVEPASDKLAGLTFVVSGVFTGYSREELQDTIVANGGKIVSSISKKLSYLVAGDKMGPS
KLEKATSFGVKIVSEEEFNQMLA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcagaaccttgaagcccgcattttggagcttactaaacgccttaactacctt
aactaccaatattaccagaacagcgtctcagaagtatctgattatgagttcgaccagatg
ctactggaactgcagaaactggaagagcagcaccctcaattcaaatctcaaaattcccct
acccaacgggtaggtggtaccatcaccaaaaactttcctacggtaaagcacaagtaccca
atgttgtcgttgggcaacacctattctgaggacgaggtacgtgagttcgacactagggtg
cgcaaggtgaccggtgaccacgtggagtatgtctgtgaactgaagtttgacggcgtggcc
atgagcctcacctataccaatggagccttaaccgccggcgtgacccgcggtgatggaacc
cgcggtgatgacatcacgcccaacgtccgcaccatccgctctattcccttgcacctgcac
ggtgaagacgttccggctgaggtggaagtacggggcgaggttttcatgcctttttccgta
tttgaggagttaaacaaggagcgtgaggaaattggggaagccttgatggccaacccccgc
aacgccacttccggcacgcttaaactgcaagactccaaagaagtggcgcgtcgccgactg
agcatgttcgcttatgccctgctcagcacccctaccctgtttgaaagccattcagaaagc
ctggaagcgctgcaacgctggggcttgaacgtctctcccacctggcgcaagtgctccacc
attgaagaggtcctggactttattcatgagtgggaaaccatacgctttgaattgcccatc
gccaccgacggcattgtagtaaaagtcaattcctacgcgcaacaggaagaattaggctat
accgccaaaagtccgcgttgggccatggcgtataaatacaaagccatggaagccgtcact
gatttgctgggcattgagtacaacgtgggccgcaccggagctgtgacccctgtagccttg
atgaaacctgtcctcctagcgggcaccacggtgaaacgcgcttctctgcacaacgcaaat
gaaattgagcgcctcgggctgatgataggtgacaaagtggtggtagagaaaggcggtgag
atcatcccgaaggtgacggctgttaaaacggaacttcgcccggaaaatgctgaggccatt
gtgtacccaactatttgcccggcctgtaccacgcctttggtgcgtaccgaaggggaggcg
aaccactattgcccaaacgagaaaggctgtccgccccaggtgaaaggcaagttggagcac
ttcatcagccggaaagctatgaacatcatgagcttgggcgaaggcaaaatagagctattg
gctgaacaaggtctggtcaccagcccagaccacctatatgatctcacatatgataccctc
ttcgggttgaaaaagacctttgtgaacgaggaaaccggcaaaagccgcgttgttacgttc
cagaaaactacagtagagaacatcctgaaagccctggagaaatcaaaggaagctcctttc
gaccgggtgctgtttgcgttaggcattcggtttgtgggcaatacggtggctcagaaactg
gcgcaacacttccggaacattgatgccctgcgggctgccacagaggaagaacttatcgcc
gttcctgaaattggtgggcgtattgctgcttcggtacgtgagtacttccaggacctggcc
aatgtacatttagtagaacggttaaaggcccatggtttgcagcttgacttaggcgagctt
gccgtagtggagcctgcctcagacaaattagctggcttaacttttgtggtgtcgggcgtt
ttcaccggatattcccgtgaggaactgcaggacaccattgtcgccaacggaggtaaaatt
gtttcttctatttccaaaaaactttcatacttggtagctggtgacaagatgggtcccagc
aagctagagaaagctacctcttttggagtgaagattgtaagtgaagaggaatttaaccag
atgctcgcttaa
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integrated database retrieval system