Rickettsia tillamookensis: H6P87_01136
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Entry
H6P87_01136 CDS
T07505
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rtl
Rickettsia tillamookensis
Pathway
rtl03030
DNA replication
rtl03410
Base excision repair
rtl03420
Nucleotide excision repair
rtl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H6P87_01136 (ligA)
03410 Base excision repair
H6P87_01136 (ligA)
03420 Nucleotide excision repair
H6P87_01136 (ligA)
03430 Mismatch repair
H6P87_01136 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtl03032
]
H6P87_01136 (ligA)
03400 DNA repair and recombination proteins [BR:
rtl03400
]
H6P87_01136 (ligA)
Enzymes [BR:
rtl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H6P87_01136 (ligA)
DNA replication proteins [BR:
rtl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H6P87_01136 (ligA)
DNA repair and recombination proteins [BR:
rtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H6P87_01136 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H6P87_01136 (ligA)
MMR (mismatch excision repair)
DNA ligase
H6P87_01136 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H6P87_01136 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Cys_rich_KTR
DUF4796_N
tRNA-synt_1c_C
Motif
Other DBs
NCBI-ProteinID:
QQV75574
LinkDB
All DBs
Position
complement(1174379..1176448)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAKKLLEELADKIAAYNHAYYIEDNPLVSDAEYDQLFNINLKLEQKFPHL
VLENSPSKKVGAKIANKFVKVTHQAPMLSLSNAFDEQDVKDFVDRIKNFLRLDEFAPIFC
EPKIDGLSFSAIYKNGLLITGATRGDGYIGEDITANVKTIKNFPHQIDNAPEFLEVRGEI
YIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKEFGFSVNEISKLADSEEEIFIFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIMRKDVRIGDYVFLQRAGDVIPKITGVDTRKRPNDTAMFDTPLFCPSCNSKL
HYDAEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNEASLAKLENMDGWGKKSVENLFKNIEKSKNVNLPRFIYALGIRHIGEQNAKLLA
REFVSYANFIAQMELLSKNDSDIYQKLNDLEGIGDKILVDIIDFFDIKENTQLIKKLGEI
LNIEDYKETREQSSLTGKIVVFTGSLPTISRAEAKATAEKLGAKVAASVSSNTDLVVAGE
DAGSKLKKAKELNIKIIDEEEWLVIVKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaagaagcaaaaaagttactagaagaattagct
gataaaatagcagcttataatcatgcttattatatagaagataatcctttagtttcagat
gccgagtatgatcagctatttaatatcaatctcaagttagaacaaaaatttcctcattta
gttttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgtaaaa
gttacgcatcaagcaccgatgctatctcttagtaatgcttttgatgagcaagacgtaaaa
gattttgtagatcgcattaagaatttcttacgtcttgatgagtttgctcctattttttgt
gagcctaaaatagacgggttgtctttttctgctatttataaaaacgggttgcttataacg
ggagctaccagaggggacggatatatcggcgaggatataacggcaaatgtaaaaacaatc
aaaaattttcctcatcaaatagataatgctccggagtttttagaagtacgaggggaaatt
tacattgaaaaacaagatttttttaacctgaataaagagcaagaagagcagggcagagat
aaatttgcaaatccccgtaatgctgctgccggttcgcttcgtcagcttgatgcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggagtaaccgaacagaatctt
gcttcttcgcaagatcaactacttacaaaattaaaagaattcggctttagtgttaatgaa
atatctaagcttgcagattccgaagaagaaattttcatcttttacgaatatttaaaaaca
aatcgagaaaatttaccttatgaaattgatggggtagtatataagctaaatgattttgca
ctacaaaatagaatggggtttatagctcgttctccaagatttgctaccgctcataaattt
ccagctataataggacaaacaaaactactttctattacagtgcaagttggtagaaccggt
acattaacgccggtagccgagcttgaacctatagaaataggcggggtaactgttagcaga
gcaacgttgcataattttcaagaaatcatgcgaaaagacgtacggattggtgattatgta
ttcttgcaacgtgccggtgacgttattcctaaaattacgggagttgatactcggaagcgt
cctaatgatacagcaatgtttgatactccgttattttgtccatcatgcaattctaagctg
cactatgatgctgaggatattattattagatgtgataacggtcttaactgtcctgctcag
aattatgagcgtattcgtcattttgtctcgaaaaacgctatggatattgaagggcttgga
cgtaagcaagttgagtttttaatagataagggattaattagcaatccactcgatatattc
tttttaaaagaaaaaaatgaagctagcttagcaaaacttgaaaatatggatgggtggggt
aaaaaatccgtagaaaatctttttaaaaatatagaaaaatcaaaaaatgttaacttgcca
agatttatatatgcgttaggtataaggcatatcggtgagcaaaacgctaaattacttgct
agagagtttgtcagctatgctaattttatagctcaaatggaattacttagcaaaaatgac
tctgatatttatcaaaaactaaacgatttagagggtatcggcgataagattctagtagat
attattgatttctttgatatcaaagaaaatacccagcttatcaaaaaacttggtgaaata
ttaaatattgaagattacaaagagaccagagaacaaagcagcttaacaggcaagatagta
gtatttaccggtagtttaccgacgatatctagagcggaagctaaagcaacggctgagaag
cttggagctaaagttgcagctagcgtatcatctaacacggatttagtcgtagcaggcgaa
gatgcaggcagtaagcttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttgtcatagtaaaaaatgtttag
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