Rhodococcus triatomae: G4H71_18675
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Entry
G4H71_18675 CDS
T06846
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03030
DNA replication
rtm03410
Base excision repair
rtm03420
Nucleotide excision repair
rtm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4H71_18675 (ligA)
03410 Base excision repair
G4H71_18675 (ligA)
03420 Nucleotide excision repair
G4H71_18675 (ligA)
03430 Mismatch repair
G4H71_18675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtm03032
]
G4H71_18675 (ligA)
03400 DNA repair and recombination proteins [BR:
rtm03400
]
G4H71_18675 (ligA)
Enzymes [BR:
rtm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G4H71_18675 (ligA)
DNA replication proteins [BR:
rtm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G4H71_18675 (ligA)
DNA repair and recombination proteins [BR:
rtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G4H71_18675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G4H71_18675 (ligA)
MMR (mismatch excision repair)
DNA ligase
G4H71_18675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G4H71_18675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QNG24804
LinkDB
All DBs
Position
3922165..3924333
Genome browser
AA seq
722 aa
AA seq
DB search
MVSESPRNAPADTADVAGGAGEAPAPAPPEVHQRWNELADEVRLHQFRYYVRDAPIISDG
AFDLLLGELNGLEEQYPDLRVPDSPTQLVGGGFATDFTPVDHLERMLSLDNVFDLDDLRT
WISRVEQETGPDLHYLCEVKIDGVALDLVYENGRLARAATRGDGRTGEDVTLNALTIEDI
PQTLTGTDDYPVPTVLEVRGEVFFRLEDFAALNASLVEEGKPPFANPRNSAAGSLRQKNP
AVTARRRLGMICHGLGRVEGFEPSSQYEAYVALAAWGLPVSSHTARVHGADAVVERVQYW
GEHRHDVEHEIDGLVVKVDEMSLHRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVGVGR
TGRVTPFAFMEPVTVAGSTVSRATLHNASEVTRKGVLIGDTVVIRKAGDVIPEVLGPVVD
VRTGDETEFVMPTHCPECGTELAPAKDGDADIRCPNQQHCPAQLRERVFHMAGRGAFDIE
VLGYEAATGLLESGAIADEGDVFSLTEEDLLKTSIFRTDKGVLSQNGARLLANLDVAKDK
PLWRVLVGLSIRHVGPTAARALAGEFGSLDRIRDATVEELAAVDGVGGTIAAAVVEWFGV
DWHRAIVDKWAAAGVRMEDERDESIPRNLEGLSIVVTGTLEGFSRDGAKESILARGGKAA
SSVSKKTAFVVVGESPGSKHDKAVQLGVPVLDEAGFRLLLEQGPEAVAVPDDTAHDDAGA
AE
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgaatcgccccgcaacgcgcccgccgacaccgccgacgtcgccggaggggcc
ggtgaggcgcccgcaccggcgccaccggaggtgcaccagcggtggaacgagctcgccgac
gaggttcgcctgcaccagttccggtattacgtgcgcgacgcgccgatcatctcggacgga
gccttcgacctgctgctcggtgagctcaacggtctcgaggagcagtacccggacctgcgg
gttcccgattcgccgacgcagttggtcggcggcggcttcgcgaccgacttcactccggtc
gaccatctggaacggatgctcagcctggacaacgtgttcgacctcgacgatctgcgcacg
tggatcagccgggtcgagcaggaaaccggcccggacctgcactacctgtgcgaggtgaag
atcgacggggtcgccctggacctggtgtacgagaacgggcggctggcgcgcgccgcgact
cgcggagacggccggacaggcgaggacgtcacactcaacgcactcaccatcgaggacatc
ccgcagacactgaccggcaccgacgactacccggtccccaccgtcctcgaggtgcgcggc
gaggtgttcttccggctcgaggacttcgcagccctcaacgcctcgctggtcgaggagggc
aagccgccgttcgccaacccgcggaactccgctgcgggctcgctccgccagaagaacccc
gcggtcaccgcgcggcgacggctcgggatgatctgccacggcctcggccgggtcgagggt
ttcgagccctcctcgcagtacgaggcgtacgtcgccctggctgcctggggtctgcccgtg
tcctcgcacacggctcgggtccacggcgcggacgccgtcgtcgagagagtgcagtactgg
ggcgagcatcgccacgacgtcgaacacgagatcgacggtctcgtggtcaaggtcgacgag
atgtcgctgcaccggcggctcggatccacctcgcgggcaccgaggtgggcgatcgcctac
aagtacccgccggaggaggccaccaccaagctcctcgacatccgggtgggcgtgggccgg
acgggccgggtgacgccgttcgcgttcatggagccggtcacggtcgcggggtccaccgtc
tcccgagccaccttgcacaacgcctccgaggtcacccgcaagggtgtgctgatcggcgac
acggtggtcatccgcaaggccggcgacgtcattcccgaggtgctcggccccgtcgtcgac
gtgcgcaccggcgacgagacggagttcgtgatgcccacccactgtcccgaatgcggcacc
gaactggcgcccgccaaggacggcgacgcggacatccgctgccccaatcaacagcactgt
ccggcacagctgcgggagcgcgtgttccacatggccggccgtggggcgttcgacatcgag
gtactcgggtacgaggcggctaccggactgctcgaatcgggcgcgatcgccgatgagggt
gacgtgttctccctcaccgaagaggacctgctgaagacgtcgatcttccgtaccgacaag
ggcgtcctctcccagaacggggcccggctcctcgcgaacctcgacgtggcgaaggacaag
ccgctgtggcgggtcctggtcggcctctcgatccggcacgtgggccccaccgcggcccgg
gctctggccggcgagttcggctctctcgatcggatccgggacgcgaccgtcgaggaactc
gcagcggtggacggcgtcggcggcaccatcgcggccgcggtggtcgagtggttcggtgtc
gactggcaccgtgccatcgtcgacaagtgggccgccgccggcgtgcggatggaagacgaa
cgcgacgaatcgattccacggaatctcgaaggtctgtcgatcgtggtcaccgggacgttg
gagggattctcgcgggacggtgcgaaggaatcgatcctcgcccgcggcggcaaggccgcg
tcctcggtgtcgaagaagacggcgttcgtcgtcgtcggcgaatccccgggttccaagcac
gacaaggcagtccaattgggtgtgcccgtgctcgacgaggccggattccggctgctcctc
gagcaggggcccgaggcggtcgcggtgccggacgacaccgcacacgatgacgcgggggcg
gccgagtag
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integrated database retrieval system
