KEGG   Rathayibacter tritici: A6122_1459
Entry
A6122_1459        CDS       T04388                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rtn  Rathayibacter tritici
Pathway
rtn03030  DNA replication
rtn03410  Base excision repair
rtn03420  Nucleotide excision repair
rtn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rtn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A6122_1459
   03410 Base excision repair
    A6122_1459
   03420 Nucleotide excision repair
    A6122_1459
   03430 Mismatch repair
    A6122_1459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rtn03032]
    A6122_1459
   03400 DNA repair and recombination proteins [BR:rtn03400]
    A6122_1459
Enzymes [BR:rtn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A6122_1459
DNA replication proteins [BR:rtn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A6122_1459
DNA repair and recombination proteins [BR:rtn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A6122_1459
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A6122_1459
   MMR (mismatch excision repair)
    DNA ligase
     A6122_1459
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A6122_1459
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 DNA_ligase_ZBD HHH_5 BRCT Nlig-Ia HHH PTCB-BRCT
Other DBs
NCBI-ProteinID: AND16596
UniProt: A0A160KSB0
LinkDB
Position
complement(1667143..1669602)
AA seq 819 aa
MSALEPAARVEELRALLRSASDDYYAADSSSLSDAEYDALVRELAALEEEHPELATADSP
TQTVGGIVGPGLAPVDHAERMLSLDNVFSAEELREWCEKTVASADRPIAWLTELKIDGLA
ISLHYEQGRLVTAATRGDGRIGEDVTVNALRVAGIPEQLAGEGHPALVEVRGEVFIPVAA
FAELNALQVTLREEAVGEARARWAVRPAATRGDFDEGKARTSALRRFPTFANPRNAASGG
LRQQLDKKAGLDLRAGQARVDSLALYVHGIGAWPDPPVATQSEVYGLLSSWGLPVSGHNR
VSASVEEVLAFVERYGRERHSVEHELDGVVVKVDELELHGELGATSRAPRWAIAYKYPPE
EVHTTLLDIVVSVGRTGRATPFAQMTKVRVAGSEVRQATLHNADVVKAKGVLIGDTVVLR
KAGDVIPEVLGPVVELRDGSEREFVMPTQCPECGTTLAPAKEGDVDLRCPNAESCPAQVR
GRVEHIGSRGALDIEALGEVSAAALTQPLVPAEPPLRTEAGLFELTVADLFPIEVVVRDS
ETGLQKLDANGDPKVVAPFKRRRQPAKDGAFDPTADAFAGDEVAVPSTNALRLIENIERA
KTKELWRLLVSLSIRHVGPVAARALAGYFGSLDAIRGASRDELAAVDGVGGIIADALIAW
FEVSWHVEIVERWAAAGVRFATPGHPGPGAADAAGGVLAGLTVVATGSLEGYSREGAQEA
ILAAGGKAGSSVSKKTDYVAAGPGAGSKLGKAEALGLRIITAAEFHLLVTEGPAAIALPE
AGAAAEGAPDADAAAVETAPVPAAATDPASTEEPTAPDI
NT seq 2460 nt   +upstreamnt  +downstreamnt
gtgagcgcgctcgagccggccgctcgcgtcgaggagctgcgggcgctcctccgttcggcg
agcgacgactactacgcggccgactcgtcgtcgctgtcggacgccgagtacgacgcgctg
gtgcgcgaacttgccgcgctcgaggaggagcaccccgagctggccaccgcggattcgccc
acgcagaccgtcggcggcatcgtcggcccgggcctcgctccggtcgaccacgccgagcgg
atgctctcgctcgacaacgtgttctcggccgaggagctgcgcgagtggtgcgagaagacg
gtcgcctcagcggatcgacccatcgcctggctcaccgagctcaagatcgacgggctcgcc
atctcgctgcactacgagcaggggcgcctcgtcacggcggccacccgaggtgacggccgc
atcggtgaggacgtcaccgtgaatgcgctccgcgtagcgggaatcccggagcagctcgcg
ggcgagggccacccggcgctggtggaggtccgcggcgaggtcttcatcccggttgccgct
tttgccgagctcaatgcgctgcaggtgacgctgcgcgaggaggcggtcggggaggcgcgg
gcgcgctgggccgtccgccccgccgccacccgaggcgacttcgacgaggggaaggcgcgc
accagcgctctccgccgcttcccgaccttcgccaacccgcggaacgctgcgagcggcggc
ctccgccagcagcttgataagaaggctggtctcgacctgcgcgccgggcaggcccgcgtc
gactcgctcgcgctctacgtacacggtatcggcgcctggcccgacccgccggtcgcgacc
cagtccgaggtctacgggctgctctcttcctggggactgccggtcagcggtcacaaccgc
gtctcggcctcggtggaggaggtgctcgccttcgtcgagcgctacggccgcgagcgccac
tcggtcgagcacgagctcgacggagtcgtcgtcaaggtggacgagctcgagctgcacggc
gagctcggcgccaccagccgggccccgcgctgggcgatcgcctacaagtacccgcccgag
gaggtgcacacgacgctcctcgacatcgtcgtgagcgtggggcgcaccggccgcgccact
ccgttcgcgcagatgaccaaggtcagggttgccgggtcggaggtacgccaggcgacgctg
cacaacgccgacgtggtgaaggcgaagggcgtgctgatcggggacaccgtcgtgctgcgc
aaggcgggcgacgtcatccccgaggtgctcgggccggtggtcgagctgcgcgacggcagc
gagcgcgagttcgtgatgccgacccagtgccccgagtgcggcaccaccctcgctccggcg
aaggagggcgacgtcgatctgcgctgccccaatgcggagtcctgccccgcccaggtccgc
ggccgcgtcgagcacatcggtagccgcggcgcgctcgacatcgaggcactcggcgaagtc
agcgcggcggccctcacccaaccgctggtgcccgcggagccgccgctgcggaccgaggcg
ggcctcttcgagctcaccgtggccgatctcttcccgatcgaggtcgtcgtgcgcgactcc
gagacggggctgcagaagctcgacgcgaacggcgatccgaaggtggtcgctccgttcaag
cggaggcgacagccggcgaaagacggcgcgttcgatccgacggccgacgccttcgcgggc
gacgaggtcgcggtgccctcgaccaacgcgctccggctgatcgagaacatcgagcgggcg
aagacgaaggagttgtggcgcctgctggtctcgctcagcatccgccatgtcggcccggtc
gcggcgcgcgcgctggccggctacttcgggtcgctcgacgcgatccgcggggcgagccgg
gacgagctggccgccgtggacggcgtgggcggcatcatcgccgacgccctgatcgcttgg
ttcgaggtcagctggcacgtcgagatcgtcgagcggtgggccgcggccggcgtacgtttc
gccacgccggggcaccccggtcccggggccgcggacgccgcgggcggagtgctcgccggg
ctcacggtcgtcgcgacgggcagcctcgaggggtactcgcgcgagggcgcccaggaggcg
atcctcgccgccggcggcaaggccggctcgagcgtctcgaagaagaccgactacgtcgcc
gccggccccggcgcgggcagcaagctcggcaaggccgaggcgctggggctgcggatcatc
accgcggccgagttccacctcctcgtgacggagggaccggcggccatcgcgctgccggag
gcgggggccgcggccgagggcgctcctgacgcggatgccgccgccgttgagaccgcgcct
gtcccggccgctgccaccgaccccgcgagcacagaggaaccgaccgcgcccgatatctga

DBGET integrated database retrieval system