Ruminococcus torques: RTO_05460
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Entry
RTO_05460 CDS
T02606
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rto
Ruminococcus torques
Pathway
rto03030
DNA replication
rto03410
Base excision repair
rto03420
Nucleotide excision repair
rto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RTO_05460
03410 Base excision repair
RTO_05460
03420 Nucleotide excision repair
RTO_05460
03430 Mismatch repair
RTO_05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rto03032
]
RTO_05460
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_05460
Enzymes [BR:
rto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RTO_05460
DNA replication proteins [BR:
rto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RTO_05460
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RTO_05460
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTO_05460
MMR (mismatch excision repair)
DNA ligase
RTO_05460
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RTO_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Lar_restr_allev
Cys_rich_KTR
Peptidase_C14
Motif
Other DBs
NCBI-ProteinID:
CBL25295
UniProt:
D4M233
LinkDB
All DBs
Position
complement(530239..532197)
Genome browser
AA seq
652 aa
AA seq
DB search
MDEQKEMNHMRELVELLNRARRSYEQENTEIMSNYEYDKLYDELLELEEKLGTRMANSPT
VNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFLGGQKALISWKLDGLTVVLTYQNGE
IVKAVTRGNGVIGEVITNNAKVFKNVPLKIPYQGELVLRGEAVISYKDFEKINEEIEDVD
AKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFTLVRAEGVDFQNSRKYQMQWLENQGFDV
VENHEVTRDTIEEEVAWFAREIEHNEVPSDGLVLVYDDIAYGQSLGTTAKFPRDSFAFKW
ADEIRNTKLLEIEWSPSRTGLINPVAVFEPVELEGTTVSRASVHNISIMEELELGVGDEI
QVYKANMIIPQIAENLTRSGVKDIPKVCPVCGGETKISMENETKTLYCTNPKCQAKHVKS
FALFVSRDAMNIEGLSEATLEKFIFHGYVKDFTDLFHLDNYRDEIMTMDGFGEKSFLKLQ
SSIEKARKTTLARLVYGLGIPGIGSANAKVICRALGNDSQRVLQAEEAELVEIQGVGAVM
AKSYVDYFKEEEHQEIYKRLLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFANRAEVKA
EIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggatgagcagaaagaaatgaatcacatgcgagaactggtggaacttctgaacagagcg
agacgttcttatgagcaggaaaatacagagatcatgagcaactacgagtatgacaagctc
tatgatgaactgcttgaattagaggagaagcttggtacgagaatggcaaacagtccgacg
gtaaatgttggatatgaagtactcagtgagctcccgaaagaacgtcatgagcgtccaatg
ctttctctggacaaaacgaaagatgtagaaaggctgaaggaattcctaggcggacaaaaa
gcattaatctcctggaaactggatggacttactgttgttctgacctatcagaacggagaa
attgtgaaggcagtcaccagagggaacggagtgatcggtgaggtcattacaaacaatgcg
aaagtatttaaaaatgtaccgcttaagattccatatcagggagaacttgtactgcgagga
gaggccgttatttcctataaagatttcgagaagatcaatgaagagattgaggatgtggat
gcgaaatataagaatccacgaaatctttgcagcggttctgttcgtcagctgaataatgaa
atcactgcgaagagaaatgtaagattctatgcatttacactcgttcgtgcagaaggcgtg
gacttccagaattccagaaaatatcagatgcagtggcttgaaaaccagggatttgatgtt
gtggagaaccatgaagtgacaagagatacgattgaagaggaagtggcatggtttgcccgt
gagattgagcacaacgaagttccgtcggacggtcttgtgcttgtgtatgatgatattgct
tacggacagtcacttggaacaacagcgaagttcccaagagattcctttgccttcaaatgg
gcagatgagatccgcaacacaaagctgcttgagattgagtggagtccgtcacgaacaggt
ctgatcaatccggtggcggtttttgagccggtagagcttgaaggaacgacagtcagccgt
gcaagcgtccataatatcagcatcatggaagaacttgaacttggtgttggagatgagatc
caggtatacaaggcgaacatgattattccgcagattgcggagaatttgacaagaagcgga
gtgaaagatattccaaaagtttgtccggtctgtggaggtgagacgaaaatctctatggaa
aatgagacaaagacgctgtattgtaccaatccgaagtgtcaggcaaagcatgtgaagtcc
tttgcactttttgtgagcagagatgcgatgaatattgagggcctttcagaggcgacactg
gagaaattcattttccacggttatgtgaaagactttacagatctcttccatcttgataac
tacagagatgagatcatgacaatggatggctttggcgaaaaatctttcctgaaactgcag
agcagtattgaaaaggcaagaaagacaacacttgcaagactggtttatggtctcggaatc
ccgggaatcggaagtgcgaatgcgaaggtgatctgccgggcacttggaaatgattcgcaa
cgcgtacttcaggcagaagaggcagaactggttgagatccagggtgtcggagcagtcatg
gcgaagagctatgtagattattttaaagaggaagagcatcaggaaatctataagcgactt
cttgacgaagtggaattagaagaagaggaagtaacagaagacagccaaaaattcgccgga
gtgaactttgttattaccggaagtgttgaacattttgcaaatcgtgcagaggtaaaggct
gagattgaaaaacgtggcggtaaggtgacgggaagtgtcacatcaaagacaaattatttg
atcaacaatgacgtaaattccacatcttcaaaaaataaaaaggcaagagatctcggagtt
ccgattatttcagaaaaagattttctggaaatgctgtag
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