KEGG   Rhincodon typus (whale shark): 109910752
Entry
109910752         CDS       T06055                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109910752 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rtp03041]
    109910752 (smndc1)
Spliceosome [BR:rtp03041]
 Complex A
  U2 snRNP components
   U2 related factors
    109910752 (smndc1)
 Complex B
    109910752 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    109910752 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 LBR_tudor HisKA_3 Mac
Other DBs
NCBI-GeneID: 109910752
NCBI-ProteinID: XP_020365583
LinkDB
Position
20:complement(51614505..51637443)
AA seq 238 aa
MSDELAKQLASYKAQLQQVEAALSTDAENEDLLKLQKDLQEVIELTRDLLSNQPSVAATN
ADNSANSMPSHKWKTGDKCMAVWNEDGQLYEAEIEEIDQENGMAAITFSGYGNADVLPLV
NLKPVEEGNDSEELGGDKPKSKKEMVAQQREYKKKKALKKAQRMKELEQEREEQKVKWQQ
FNNRAYSKNKKGQVKKSIFASPESVTGKVGVGTCGIADRPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagatgagctggcaaagcagctggccagttataaggcacaacttcaacaagtagaa
gctgcgttatctactgatgcagaaaatgaagatctccttaaattacaaaaggatttgcag
gaagttatagagctgaccagagatctgttatcaaatcagccttctgttgctgcaactaat
gcagacaactcagcaaattccatgcctagtcataaatggaagactggtgacaagtgtatg
gctgtttggaatgaagatggacaattgtatgaagcggagattgaagagattgaccaagaa
aatggtatggctgccatcaccttttctggatacggtaatgctgatgtgcttcccttggtc
aacctgaaacctgttgaagaaggaaatgattctgaagagctgggtggtgacaaacccaaa
tcaaagaaggaaatggttgctcaacagagggagtataagaagaagaaagcattgaaaaaa
gctcaaagaatgaaggaacttgaacaggagcgcgaggaacaaaaagtaaaatggcagcag
tttaataacagagcctattccaagaacaagaaaggacaggtgaagaaaagcatttttgcc
tcacctgagagtgtgactggaaaagttggagttggcacatgcggaatagcagacagaccg
atgactcagtaccaagacacatcgaaatacaacgtgcggcatcttatgccacagtag

DBGET integrated database retrieval system