Rhincodon typus (whale shark): 109916029
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Entry
109916029 CDS
T06055
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109916029 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109916029 (lig4)
Enzymes [BR:
rtp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109916029 (lig4)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109916029 (lig4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
C8-3_MUC4
Sigma70_r1_1
Motif
Other DBs
NCBI-GeneID:
109916029
NCBI-ProteinID:
XP_020371314
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All DBs
Position
6:98372876..98381828
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AA seq
912 aa
AA seq
DB search
MSVASISNNSQIKTVASKVPFSDLCLTLEKIQRSKSRPDKNKYFKDFLDSWRNFHNTLHK
NDLNTTDSFYPALRLILPQLERERMAYGIKETMLAKLYIDVLGLPKDGKDALKLLNYRSP
TSCHGEAGDFAVIAYFVLKQRCPTKGTLTVQEVNEHLDSIALNNAAKKKDLVKKSLLQLI
CRSSALEQKWLIRMILKDMKLGISQQTVFQLFHADAAELHSVTTDLEKVCVQLHDPTVSL
SDVSIMMFSPFKPMLAAIANIKHIEKLMHNQSFYLETKLDGERIQLHKDGDVYKYFSRNG
YDYTQQFGASSLQGSLTPFIHNTFKSNLQNCILDGEMMAYNPITQAFMQKGNKFDIKRMV
EDSELQTCFCVFDVLMVNNQKLANETLRKRHEILQTLFISVPGRIQVVEKTEIKTRKDVA
DALNEAIDKREEGIMVKDPLSVYKPDKRGEGWSKIKPEYVDGLIDELDILIVGGYFGKGH
RGGMISHFLCAVAESASPGEKPSVFHSLCRVGSGYTMKELYDLGLKLAKHWKPYHRRDPP
TNILCGTEKPEVYIEPCNSVILQVKAAEIVSSDMYKTGCTLRFPRIEKIRDDKDWHDCMT
LHDLDQLHDKASGKLASKHVDLSDDELDKKKRKIPSKSKKLIGIAEQFKAQDLSSVDKVS
NIFEDVEFCVLNGLHDHPKAQLEKGIAECGGLVVQNPGPDTYCVIVGMVNVRVKNLIAAN
ELDVVKADWLVDCLQKKCFIPWQPQFMIHMSPSTEKHFAQEYDHYGDSYYADVDKSHLRE
IFKRMSKPEQHLPFKTIADLEQRYLWDASPLCMFRHCIVYVDFCTTIGDVSTQVHGTSLD
LRVLELRFHGAQCVTNLAEGVSHVIVGHDVRRLSELKLLRMTFQRKFKIVLESWITDSVK
AGSVQDEKNYLL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagcatctatatcaaataattcacagataaagactgtggccagtaaagtgccc
ttttctgacttgtgtttaactctggaaaaaatacaaaggtctaagtccagacctgataaa
aataagtatttcaaggactttctagattcatggagaaatttccataacaccctccacaag
aatgatttaaacactactgattccttctacccggcactgcgtctaattcttcctcagctc
gagagggagaggatggcatatggaataaaagagacaatgctcgccaaactttacattgat
gttcttggcttgccaaaagatggaaaagatgcacttaaactcctgaactatagatctcca
accagctgtcatggagaggctggtgactttgcagtgattgcgtattttgttttgaagcag
aggtgtccaactaaaggcacgctaacggtgcaggaggtaaacgaacatttggattctatt
gcacttaataatgctgccaagaaaaaagatttggtcaaaaagagtctgctgcagctaatc
tgtcggagttcagctttggaacaaaagtggcttattcgtatgatcttgaaggatatgaaa
ttgggtattagtcagcagactgtatttcagttattccatgcagatgcggcagagcttcac
agtgtaacaacagatctggagaaagtttgtgtacagctccatgatcctacagtgtccctc
agtgatgtctccatcatgatgttttctccttttaagccaatgcttgctgccattgccaac
ataaagcacattgaaaagttaatgcacaatcagagcttctatttagaaactaaactggat
ggagagcgtatccagctccacaaggatggagatgtttacaaatatttttcgcgcaatgga
tatgattacacccagcaatttggtgcttcttcattgcaaggatccctcacaccattcatt
cataataccttcaagagcaatttgcaaaactgcattcttgatggcgagatgatggcttat
aaccccatcacccaagcctttatgcagaagggaaacaagtttgacatcaaaagaatggtg
gaagactcagaattgcaaacttgtttctgtgtctttgatgttttaatggtaaataaccag
aagctggcaaatgaaaccctcaggaaaagacatgaaattcttcaaacactcttcatatca
gtgccagggcgcattcaggttgtggagaaaactgaaataaaaacaagaaaggatgtagct
gatgccctaaatgaagctatagacaaaagggaagaaggaatcatggtgaaagatcctttg
tctgtttataaaccagacaaacgtggtgaaggctggtcaaaaattaagccagaatatgtt
gatggcttgatagatgagcttgacatcttaattgttggtggttactttggcaaaggacat
cgcggtggaatgatatcccactttctgtgtgctgttgcagagtctgcttcgcctggtgag
aaaccatcagtcttccactcactttgccgtgtaggttctgggtacacgatgaaggaattg
tacgatcttggactgaaactggctaaacactggaaaccttaccacagaagagatcctcca
acaaacattttgtgtggcacggaaaaaccagaggtctacattgagccgtgcaattctgtt
attctacaagtcaaagcagctgaaattgtgagcagtgatatgtataaaactggttgcacc
ttgcgttttccacgaattgaaaagatcagagatgacaaggattggcatgattgcatgaca
ttgcacgatttggatcaactgcatgataaagcttctgggaaacttgcatcaaaacatgtt
gacttaagtgatgatgaactggataagaaaaagcgtaaaattccttcaaagtccaaaaaa
ttgatcggcattgcagaacagtttaaagcccaagatctatctagtgttgacaaagtttct
aatatctttgaagatgttgaattttgtgtcttgaatggtcttcatgaccatcccaaagct
caactagagaagggaatcgctgaatgtggaggattggttgtgcagaatcctgggcctgac
acttattgcgttattgttggcatggttaatgtccgtgtcaaaaatcttattgccgctaat
gagcttgatgtggtcaaagctgactggttggtggactgtttgcaaaagaagtgttttata
ccatggcaaccccagtttatgattcatatgtcaccttccacggaaaagcattttgcccag
gaatatgatcattatggagacagttattatgctgatgttgataaaagccatctgcgggag
atattcaaaagaatgagtaaaccagaacaacatttgccctttaaaactattgctgacttg
gaacagcgttatctatgggatgcatcacctctgtgtatgttcagacattgcattgtttat
gtagatttttgcactacaattggtgacgttagtacacaggtacatggcacgagtttagat
ttgagagttttggagttgcggtttcacggtgcgcaatgcgttactaatttggcggaaggt
gtctcgcatgtcatcgttggtcatgatgtacgacgtctctctgagctaaaattactcagg
atgacatttcaaaggaagttcaaaattgtactggaatcatggataactgattcagtaaaa
gcaggaagtgtgcaagatgaaaagaattacctactgtag
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