Rhincodon typus (whale shark): 109917090
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Entry
109917090 CDS
T06055
Symbol
lfng
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform X1
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp00514
Other types of O-glycan biosynthesis
rtp04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
109917090 (lfng)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
109917090 (lfng)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
rtp01003
]
109917090 (lfng)
Enzymes [BR:
rtp01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
109917090 (lfng)
Glycosyltransferases [BR:
rtp01003
]
Glycan extension
O-Glycan
109917090 (lfng)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
DUF2785
Glyco_tranf_2_4
Motif
Other DBs
NCBI-GeneID:
109917090
NCBI-ProteinID:
XP_020372457
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Position
21:complement(49235735..49256887)
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AA seq
379 aa
AA seq
DB search
MPRLCSRKVFLWLLAAVFTCLLLLLLPDQGQGQAGQRRLELRSRSLQSWESPWPEEEDGE
EVTAAAPEPPAHSFREYFSELSRTRGSGRRLASPLELAATPQPFRDDVSAGDLFIAVKTT
KKFHRARLELLLETWISRSREQTYIFTDGEDEELKRKTAAGHLVNTNCSAAHSRQALSCK
MAVEYDKFIESGKKWFCHVDDDNYVNTRTLVKLLAQYPHTQDIYIGKPSLDRPIEATERI
SDTKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFINTAEKIRLPDDCTIGYIIEAI
LGVKLIRSNLFHSHLENLQQVMRADIPNQVTLSYGTFENKRNAINLKGDFSIEQDPSRFR
SIHCLLYPDTPWCPRNVTY
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggctgtgctccaggaaggtgtttctctggctgttagctgcagttttcacctgc
ctattgttgctgctcctaccggaccagggacagggccaagctggccagcggagactggaa
ctccggagccgctctctgcagagctgggagagcccctggccggaggaagaggacggcgag
gaggttacagccgcagccccggagccgccggcccacagctttagggagtatttcagtgag
ctgagccggaccaggggctccgggaggaggctggcctcgccactagagctggctgccact
ccacaaccattccgggacgatgtcagtgcgggagacctgtttatcgccgtgaaaaccacg
aagaaattccaccgggcacggctggagctgctgctggagacctggatctcccggagccgg
gaacagacgtatattttcactgacggggaagacgaggaactgaagagaaagacagcagca
ggccacctggtgaatacaaactgctcagctgctcacagccgacaagcactttcctgcaag
atggcagtcgagtacgacaagtttatcgaatcagggaaaaaatggttctgtcatgtcgat
gatgataactacgtgaacacccgaacactggtgaagctccttgcacaatacccccacaca
caggatatttacattgggaaaccaagcctggatcggcccattgaggctacggagaggatt
agtgatactaaagtgcgtccagtgcatttctggttcgccactggtggagctggattctgt
atcagccgagggctggcactcaagatgagtccgtgggcaagtggaggtcacttcattaac
actgcagagaaaatccgtcttcctgatgactgcaccattggttatattattgaggccatt
ctgggagtgaaactgattcggagtaacctgttccactctcatttggagaacctgcaacaa
gtaatgagagctgacattcccaaccaggttacattaagctatggcacatttgaaaataaa
aggaatgccattaatctgaaaggggacttttccattgagcaggatccttctcggtttcgc
tcaattcattgcctcctgtatcctgataccccatggtgtcctcgcaatgttacttattaa
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