Rhincodon typus (whale shark): 109917877
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Entry
109917877 CDS
T06055
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109917877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109917877
Enzymes [BR:
rtp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
109917877
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
109917877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
109917877
NCBI-ProteinID:
XP_048463839
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All DBs
Position
18:47564276..47585566
Genome browser
AA seq
415 aa
AA seq
DB search
MEAQRLLEGPTLSSEYFQNWYGSSDPLPPRLQQTQAQSATGPDPDSLEEAATPEAGQAAP
KRKRGRPPGLQKNKTEKNKSEGASTKRSKTDGNSGGKQEKITDAFKVTKRKIDRFNGTTE
AELLTKTLPDILTYGLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFLSGLIDKPLSHL
DDASLPEKYGIGFTNMVERTTPGSKDLKSKEIREGGKILLQKLQKFKPRIAVFNGKCIYE
IFSKEVFGVKVKKLEFGQQPHKIPEGETVVYVMPSSSARCAQFPRAQDKVHYYIKLKELR
NHLKGIKTPTEVTEVEYSFDLQKAQAEAKKMAIKEEKYDPGYEAAYGGSYIEKSTEINGQ
CSFATTELGASSNSEFNTGSMFCQVPDGQWMTQSFADQIPSINNYCTESQEENST
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggaggcccagaggctgctcgaaggcccgacgctgtcgtccgagtactttcagaattgg
tacgggagctccgacccgctgccgccgcgtctccagcagacccaggcccagtcagccaca
gggcccgatcccgacagcctggaagaggccgcaaccccagaggccggacaagcagctcca
aaacgtaaaagaggaagacctccaggactacaaaaaaataagactgagaaaaataagtct
gagggtgcaagcaccaaacgaagcaaaaccgatgggaactcaggaggcaagcaagaaaaa
atcactgatgcttttaaagtcacaaaaagaaaaatcgatcgattcaatggaacaaccgaa
gctgagcttttaacaaaaaccttaccagatatattgacctatggtttagacattgtgatt
attggaattaacccagggttgatggcagcatacaaaggacatcattaccctggaccagga
aatcatttttggaaatgcttgtttttgtctggtcttattgataagcctttaagtcatctg
gatgatgcttctttaccagaaaaatatggaataggtttcacaaacatggtagagagaact
actccaggaagcaaggacctcaaaagcaaagagattcgggaaggaggaaaaatacttctg
caaaaactacagaaatttaagccgcgaattgctgtgtttaatgggaaatgcatctatgaa
atttttagcaaagaagtttttggagttaaagtgaagaaattggagtttgggcaacagccg
cacaagatccctgaaggagaaacggtggtctatgtcatgccttcttcaagtgcaaggtgt
gcgcagtttcctcgggcccaggacaaggtacattattatatcaagctaaaagaactacga
aatcacttgaagggcattaaaactcctacagaggtcactgaagtagaatactcatttgac
ttgcaaaaagctcaagcggaagccaagaaaatggcaattaaagaggaaaagtatgaccct
ggatatgaagctgcttatggtggttcatacattgaaaaatccactgaaatcaatgggcag
tgcagttttgctacaactgaactaggtgcatccagcaattccgagttcaacactggttca
atgttttgccaagttcctgatggccagtggatgacccaatcatttgctgatcagattcct
tcaatcaacaattactgcacagagtctcaagaagaaaatagcacataa
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