Rhincodon typus (whale shark): 109918114 Help Entry 109918114         CDS       T06055                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism rtp  Rhincodon typus (whale shark) Pathway rtp04115   p53 signaling pathway rtp04145   Phagosome rtp04148   Efferocytosis rtp04350   TGF-beta signaling pathway rtp04510   Focal adhesion rtp04512   ECM-receptor interaction rtp04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:rtp00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109918114 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109918114 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109918114 (thbs1b)    04148 Efferocytosis     109918114 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     109918114 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     109918114 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     109918114 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:rtp04131]     109918114 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:rtp00536]     109918114 (thbs1b) Membrane trafficking [BR:rtp04131]  Endocytosis   Phagocytosis    Opsonins     109918114 (thbs1b) Glycosaminoglycan binding proteins [BR:rtp00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109918114 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CCN EGF_3 TSP1_ADAMTS TSP1_CFP_C EGF cEGF Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  109918114 NCBI-ProteinID:  XP_020373599 LinkDB All DBs Position 8:63802981..63820051 Genome browser AA seq 1168 aa AA seqDB search MKPLHGLFLLLMIVACSSKRIQDAGADGVFDLFDITGLTRKNVGVHMVKGPEASSPAYRI LNPDLIAPASENSFSELIDHIQQEKGFIFLATLRQIKKSRGTLVAIDTLQGTRIFEILSN GKANTLDLTITIDGKQSMVSITDAHLANTRWKNLTLFVQEDVATLYVGCEKVNGVELEEA IHKVLKPGDYSLRLAKGGPGLRNNFQGVLQNVRFVFGTSLETILMNKGCYSTARGILPLP IRGSESPAIRTNFYGHKTKDLQTVCGISCEELSNMFSELQALRTMVTQLVDNVQKVTAEN ELIARSIGIKQIGGCFHNGMTYKDKDQWKVDNCTDCTCQSSVTFCQRISCPTVSCADAIV PDGECCARCPSIPNESEAGWSPWSEWTHCSVTCGIGTQQRGRSCDRINSDCHGTSVQTRS CHLEECDKRFKQDGGWSYWSPWSSCSVSCGTGVITRIRLCNSPMPQMGGKECVGQKRETE KCEQVPCPIDGNWGVWSPWNSCSVTCGGGIQKRTRHCDSPAPKYEGKNCVGESRETQLCN KLECPIDGCLSNPCFAQSKCTSFPDGSWTCGPCPRGYRGDGIHCEDINECTEVPDTCFQV NGEHRCENTEPGYNCLPCPPRYTGIQPFGRGIEEATNNKQVCEPRNPCKEGTHNCNKHAR CIYLGIFSDQMFRCECRPGFAGNGIICGEDSDLDGWPNEDLTCVVNATYHCKKDNCPSLP NSGQEDHDKDGVGDACDNDDDNDGIPDERDNCAFLFNPRQYDYDRDDVGDRCDNCPYDHN PDQTDTDANGEGDACAIDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCPLEHNP EQTDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDVCDHDDDNDG IPDEKDNCRLKANPDQTDSDGDGRGDACKDDFDGDSILDIYDVCPENFEITETDFRKFQM VPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTERDDDY AGFVFGYQSSSRFYVVMWKQITQTYWLDTPTRAQGYAGLSIKVVNSTTGPGEHLRNALWH TGNTEGQVQTLWHDPRNIGWKDRAAYRWQLTHRPKTGFIRVVMYEGRKIMADSGAIYDKT YAGGRLGLFVFSQEMVYFSDLKYECRDS NT seq 3507 nt NT seq  +upstreamnt  +downstreamnt atgaagccactgcacggactcttcctccttttaatgattgttgcttgctcctccaagcga atccaagacgccggagcggatggagtctttgatctgttcgacatcactggccttactcgc aaaaatgtaggggtgcatatggtaaagggaccggaggctagcagcccggcttacaggatc ctgaaccctgacctcattgccccggcttcagagaacagcttcagtgagctgatcgatcac atccagcaggagaagggattcatcttcctggccaccctgcgccagataaaaaagagccgg gggaccttagtggccatcgacacgctgcaagggacgcgcatcttcgagatcctgtccaac ggcaaggcaaacactctcgacctgaccatcaccatcgacggcaaacagagcatggtgtcc atcaccgatgcgcacctggccaatacccggtggaaaaacctcactctcttcgtgcaggag gacgtggccacgctctatgtgggatgtgagaaggtcaatggcgtggagttggaggaagct attcacaaagtgctgaagcctggtgactacagcctgaggctggctaaagggggacctggg ctccgaaacaactttcagggagttctgcagaacgtgcgttttgtctttgggaccagcttg gaaaccattctgatgaacaagggctgctacagtactgcccgagggattcttcctttacca atcaggggctctgaaagcccggccatcaggaccaatttttacggtcacaaaaccaaagat cttcagacggtctgtggcatctcctgtgaggaactgtccaacatgttctctgaactgcaa gctctcaggaccatggtcacccagctggttgataatgttcagaaagtgactgcagaaaat gaattaattgcaagaagcattggaatcaaacagataggaggatgtttccacaatggcatg acttacaaagacaaagatcaatggaaagtggacaactgcacagactgcacttgtcagtca tcagtcaccttttgccagaggatttcctgccctactgtgtcatgtgctgatgctatagtc ccagatggggaatgctgtgcccgctgtccatcaattcccaatgaatccgaggctggctgg tctccctggtctgaatggacacattgttctgtcacctgtggaattggaacccagcagcga ggccgctcctgcgatcggattaatagtgactgtcatgggacctctgttcagactcgtagc tgtcatttagaagaatgtgacaagagattcaaacaagatggtggttggagttattggtcc ccttggtcgtcatgctcagtgagctgtggaactggagtgatcactcgcatccgcctgtgt aactccccaatgccacaaatgggtggcaaagagtgtgtgggtcagaagcgggaaactgaa aagtgcgaacaggtcccatgcccaattgatgggaactggggtgtctggtcaccgtggaac tcttgttccgtcacctgtggaggaggaattcagaaacgtacacgtcattgtgacagtcca gcaccgaaatatgaaggcaaaaattgtgtgggtgaatcccgggagactcagctatgcaac aaacttgagtgcccaattgatggatgtttatcaaatccatgctttgctcaaagcaagtgt acaagcttcccagatggctcctggacgtgtggtccctgccctcgtggttacagaggagat ggtattcactgtgaggacattaatgagtgcacagaagtgcctgatacctgttttcaagtc aatggggagcatagatgtgaaaacacagagccaggttacaactgtctgccctgcccacca cgatacactggcattcagccatttggcagaggcattgaggaggctacaaataacaagcag gtctgtgagccacgtaacccctgcaaagagggtacacacaattgcaacaagcatgccaga tgcatttaccttggtatcttcagtgaccagatgttccggtgtgaatgcaggcctggtttt gctggcaatggcatcatctgtggagaggatagtgacttggacggttggccaaatgaagat ctcacctgtgtggtcaatgctacttaccactgtaaaaaggacaattgtccatcactccct aattctggacaagaagatcatgataaggatggagttggcgatgcctgtgataatgatgac gataatgatggcattccagatgagagggacaattgcgcattcctgtttaatcctcgccaa tatgactatgatcgggatgatgtcggagatcgctgtgacaactgcccttatgaccacaac cctgaccagacagacactgatgcaaatggagagggagatgcctgtgccattgatattgat ggagacggcattctgaatgagaaggacaactgtccatatgtgtataatgtggaccagagg gatacagatttagatggtgttggtgatcagtgtgataattgtccattggaacacaatcca gaacaaaccgactcagactctgaccttgtaggagataaatgtgataataaccaagatatc gatgaagatggtcaccagaataacctggataactgcccctacattcccaatgctaaccag gcagatcacgacaaggatggaaagggtgatgtctgtgatcatgatgatgataatgatggt attcctgatgagaaggacaattgtaggttgaaagccaatcctgaccaaactgattctgat ggcgacggccgaggtgatgcttgcaaggatgattttgatggagacagtatcctggacatc tatgatgtttgtcctgaaaattttgaaatcactgagactgacttccgcaaattccaaatg gtaccattggatcctaaaggaacatcccagattgaccccaactgggtagtcagacatcaa ggcaaagagttggtgcagactgttaactgtgaccctggcattgctgtaggatatgatgaa ttcaatgctgtggacttcagtggtactttcttcataaatactgagcgagatgatgactat gctggatttgtatttggataccagtcaagcagtcgcttctatgtggtaatgtggaagcag atcacacaaacctattggctcgatacaccaaccagagcacagggctatgctggactctcc atcaaagtggtgaactctacaactgggccaggagagcacttgcgtaatgcactctggcac actggcaatacagaaggacaggttcaaactttgtggcatgatccacgtaacattggttgg aaggacagggctgcttacagatggcagttaacccacagacccaagactggattcatcaga gttgtaatgtacgaggggagaaagatcatggctgactctggggccatctacgacaagact tatgctggtggacgattgggtctctttgtcttctctcaagaaatggtttacttctctgat ctcaaatatgagtgtagagattcgtaa

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