Rhincodon typus (whale shark): 109919065
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Entry
109919065 CDS
T06055
Symbol
ltbp1
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
109919065 (ltbp1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109919065 (ltbp1)
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
109919065 (ltbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
hEGF
EGF_3
FXa_inhibition
EGF_TEN
Plasmod_Pvs28
Motif
Other DBs
NCBI-GeneID:
109919065
NCBI-ProteinID:
XP_048457319
LinkDB
All DBs
Position
9:76389279..76683675
Genome browser
AA seq
1488 aa
AA seq
DB search
MEWVRYSVLLWLLSVFQPHQVCPEKRNLRRITYVLHSGKRHPASGRASVSAFGTRHGASS
SYTARAQGSAPVLEVKTTYRRSSPQVRTRRMGKASPQVQQQIAQFHPHQYYQQQSIRHPV
HYQKQQLNGVNVCGGQCCHGWAQAPGSQRCTKPNCSPKCQNGGMCLRPQLCVCKPGTKGR
ACEETTSSAHPTNNQDTVAQGQPIPQQVPQQTVTQRLVQPPQKINSLGHMSLTVKQKPSM
MVPQQSHMVPLPSQPLMMLVQRGQSQQFTFKPKYYSQKFYPGGQAAESSLPQTSSGNPFQ
VGNHTGRIKVVFTPTICKVTCMKGKCHNNCQQGNTTTLISENGHAADTLTAQNFRVVVCH
LPCMNGGQCTSRNKCQCSPHFTGKLCHIPVQPSNGQRHPQQPGKAPTSSVVHSTHTLPLS
VGGKPGLQMKFPPNIVNIHVKHPPEANVQIHQVSRVDSSSLEQTVNGVKTRQQQITYHAP
NPSVPHVPNSVYTHHQQVRTHHFPRTHTKLGRCFQETTGTQCGKPLPGLSKQEDCCGTVG
TSWGFHKCQKCPKKPSFPVRGNGQVVECPVGYKQVNATHCQAENLLIEEKGPCYRFVSAG
KQCMHPLSVQLSKQMCCCSVGKAWGTNCEKCPILGTAAFKQICPGGMGYHVSQTFKKVTI
KPGSESKLQKLPDSTMSHPEIKHSDPIPTPAKVPPEQQPLEAFPSTETQQPAVLIPEVAT
STPEQELVKDERVVESGLPQLSPSITTIQINSGFPEVVEKTSPPNPVHIAPDVSTSSLTH
FIASTQVAEIDECSVDPRICGPGQCINLPEGYTCNCNPGYQLNAVKTACIDVDECAQDQR
PCSHGHCKNTVGSFRCLCHHGFTSDGGTECSDIDECLRPNICGDGHCINVVGSYRCQFCD
AGYKMNRGQCEDIDECQDSNKCPSGRCINNPGSYECVSCPDGYTGRNGQCVDVDECLNRS
TCANGRCSNLEGAYICTCNRGYEPSPDGKLCKDVDECQDAILCTNGQCTNTEASFYCECD
LGYHLTATGDQCEDIDECQQNLDTCQGGVCINNAGSFTCTCPGGFQLVDGVRCQDVDECA
DGTKCRDGSCVNTEGSYRCECARGYRLNPPSETCVDVDECANSTVCGSHGFCENTAGSFR
CLCDRGFQDLLEGQGCVDVNECEAISGVCGEAVCENVDGSFLCICPDDVQEFDPMTGECR
SPEPSVLVQAEGKRECYYNLNDAHFCDNVLTSNVTKQECCCTLGAGWGDNCEVFPCPMFG
TPEFAAMCPEGKGFIPNGDSAYGISGHNYRDADECVLFGQEICKNGFCLNTQPGYECYCR
QGFYYDPVKLQCLDIDECQDIASCVNGQCLNTEGSYNCFCTLPMVLDPSGKRCTQPLDSD
DIDECQDPSNCIDGQCINTDGSYNCFCTYPMILDSSGKRCIEPPDTIEQTTEEDVCWQAV
SSQIVCGSPLVDRRTTYTECCCMYGEAWGMDCALCPRRNTVYQLINLK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggtgaggtacagcgttttgctgtggctgctctcggtctttcagccgcaccaa
gtctgtcctgagaagaggaatctcaggaggatcacttacgtgcttcactcgggcaagcgt
cacccggcgagcggccgggctagtgtgtctgctttcggcaccaggcacggcgcttcctcc
tcttacacagccagggcgcagggctcggctccagtactggaggtgaaaaccacttacagg
aggagctcgcctcaggtcaggacccggcggatgggcaaggcgagcccgcaagtccagcag
cagatcgctcagttccatccacaccagtactaccagcaacagtccattagacaccctgtg
cactaccaaaaacaacagcttaacggagttaatgtttgtggcggtcagtgctgtcatgga
tgggcccaagctcctggctctcaaagatgcaccaagccaaattgttctccaaagtgccaa
aatggagggatgtgcctacggccccagctctgcgtgtgtaaaccaggcaccaaaggcaga
gcctgtgaggagacgacatccagtgctcatcccacaaacaatcaggacactgtggcacag
gggcagcccatcccgcaacaggtgccccagcagaccgtgacccagagattggtgcaacct
cctcagaagatcaattcactgggccacatgtctctgactgtgaaacagaaaccttccatg
atggtgccccagcagtctcacatggtgcctcttccgtctcaaccactgatgatgcttgtc
caacgtggccaatctcaacagttcacatttaaacccaaatattacagccagaagttttat
cctggaggacaggctgcagaaagttcgctgcctcaaacttcgtctgggaacccgttccaa
gtcggaaaccacacgggtcgcatcaaggtggtcttcacccccactatctgcaaagtgacc
tgcatgaaaggcaagtgccacaataactgccaacaggggaacaccacaaccctcatcagt
gagaatggccacgctgcggatactctgacagcgcagaactttcgtgtggtggtctgccac
ttgccctgcatgaatggaggacagtgcacttccaggaacaaatgccagtgctctcctcat
tttaccggcaagctctgccatatcccggtgcagccttctaatggccagcggcatccccag
cagcctggtaaagctccgacctcatcggtagttcattcgacacacaccctgcctctgtcc
gtcggtgggaagccgggcctacagatgaagttccctccaaacatagtcaatatccatgtt
aaacacccaccggaggcaaatgtgcagatccaccaggtctccagagtggacagctcctcc
ttggaacagacggtcaatggtgtcaagacgaggcagcagcagatcacttaccatgcacca
aatccttcagtccctcatgtaccgaattctgtctacactcaccatcagcaagttcgcacc
caccattttcccagaacacacaccaagttaggacgctgcttccaggaaaccacaggcaca
cagtgtgggaaacctcttcctggcctttcaaagcaagaagattgctgtggaactgtgggt
acttcttggggtttccacaaatgccagaaatgtcctaagaagccgtctttccccgttcga
ggaaatggacaagtggtggagtgccccgtgggttacaagcaggttaatgctacacattgt
caggctgaaaatcttttaattgaagagaaagggccctgctaccggtttgtcagtgcagga
aagcagtgcatgcaccctctgtctgtgcagctcagcaagcagatgtgctgttgcagcgtt
ggcaaggcctggggcacaaactgcgagaaatgtcccattctgggaacagctgccttcaag
caaatctgccccggtggaatgggctaccatgttagtcaaaccttcaagaaggttactatc
aagcctgggtctgagagtaaattgcagaagcttcctgactctaccatgagtcatcctgag
attaaacactctgatccgatacctactccagccaaggtaccaccagaacaacagccctta
gaagctttcccatcaactgagactcaacaaccagcggtgttaataccagaagtggccacc
agcacacctgaacaggaacttgtaaaagatgagcgcgttgtggaatctggcctgccccag
ctatcgcccagcattacaaccatccagataaactctggcttccctgaagtggtggaaaaa
acctcacccccgaacccggtccacattgctccagatgtgtctacttccagtctgacccat
ttcattgcatctactcaagttgcagaaatcgatgagtgctcggttgatcctcgaatctgt
ggacctggccaatgtatcaatctaccagagggatacacgtgtaactgtaatcctggctac
cagctcaacgcagtgaaaactgcttgcattgatgtagatgaatgtgcccaggaccaacgc
ccatgctcccacggacactgtaagaacacagtgggaagcttccgctgcctctgtcaccac
gggttcacatcagacggaggaacagaatgctctgatattgacgagtgcctgaggcccaat
atctgtggagatggtcattgcattaatgttgtaggctcctacaggtgccaattctgtgat
gctggatataaaatgaacagaggccagtgtgaagacattgacgaatgccaggattccaac
aaatgtccgtctggaagatgcattaacaatcctggctcttacgagtgtgtgtcttgccca
gatggatacacaggcagaaatggccaatgcgtagatgttgatgaatgcctcaacagatcg
acctgtgcaaacggcagatgttcgaacctagagggggcctacatctgtacctgtaaccga
ggctatgaaccatcccccgatggcaaactgtgcaaagatgtggatgagtgtcaagatgcc
attctgtgcaccaatgggcaatgcacaaatacagaggcctccttctactgtgaatgcgac
ttgggttaccatctgaccgctacaggggaccagtgtgaagacatagatgaatgccaacaa
aacttggatacttgccaaggaggtgtgtgcatcaacaatgctggctcctttacatgcacg
tgtccaggtggcttccagctggtggatggtgttcggtgccaagatgttgatgaatgtgca
gatggcaccaaatgccgtgatggatcttgtgtcaacaccgaaggctcctatagatgtgaa
tgtgccagaggctatcgcctgaaccctcccagtgaaacatgcgttgatgttgacgaatgt
gcaaacagcacagtgtgcggcagccatggattctgtgaaaacacagctgggtccttccgc
tgtctctgtgaccggggcttccaggatctactggaggggcaagggtgtgtggatgtaaac
gaatgtgaagcgatcagcggggtttgtggtgaagctgtctgtgagaacgtcgatggctca
ttcctttgcatctgtccggatgatgtccaggaatttgacccaatgaccggggagtgccgc
tcccctgagccttcagtgctcgtacaggcggaagggaaaagggaatgctactacaatcta
aatgatgcccacttctgtgacaatgtcctgacttccaacgtcaccaagcaagaatgttgc
tgcaccctgggagcaggctggggtgataactgtgaagtgttcccgtgtccgatgtttggc
actcctgaatttgctgccatgtgccctgagggtaagggcttcattcctaacggagactcg
gcctatggaatcagtggacacaactacagagatgctgatgaatgtgttttatttggacaa
gagatctgtaagaatggcttttgcctgaacacacagcctggctacgaatgttactgtaga
caaggcttctattatgatccagtcaaactgcaatgtcttgatatcgacgaatgtcaggat
atagcgagttgcgtaaatgggcaatgccttaacactgaaggttcgtacaactgtttctgc
acactcccaatggtcctggatccttcggggaaacgctgcacgcagcctttagattccgat
gatatcgatgagtgccaggatccatcaaattgcatcgatggtcaatgcattaacactgac
ggctcgtacaactgtttctgcacatacccaatgatcctcgactcttcagggaaacgttgc
attgagcctccagacactattgaacaaaccactgaagaggatgtgtgctggcaggctgtg
agcagtcaaattgtttgtgggtcacccctggtggatcggaggactacctatactgagtgc
tgctgtatgtatggagaagcctggggtatggactgtgctctttgtccccgtcgaaacaca
gtttaccagttaataaacctgaaatag
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integrated database retrieval system
