Rhincodon typus (whale shark): 109923908
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Entry
109923908 CDS
T06055
Name
(RefSeq) RLA class II histocompatibility antigen, DP alpha-1 chain-like
KO
K06752
MHC class II antigen
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04145
Phagosome
rtp04514
Cell adhesion molecules
rtp04672
Intestinal immune network for IgA production
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109923908
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
109923908
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
109923908
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109923908
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109923908
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
109923908
Exosomal proteins of epithelial cells
109923908
Exosomal proteins of breast milk
109923908
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1-set
MHC_II_alpha
Ig_3
Ig_2
Motif
Other DBs
NCBI-GeneID:
109923908
NCBI-ProteinID:
XP_048472862
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All DBs
Position
35:complement(5225507..5274778)
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AA seq
247 aa
AA seq
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MEVECYITVLMLVLIQGTLAVKYLHENTLVYFVQERSPNKHFDLLVDGDEVFYMDFNLKK
EVARIPEFDGHYIEGGEAGISANIANLKLSFNVWKNLSHGTPEPKVAPQIAMYPEEPVEW
GQPNTLICLADRFYPPHISMTWLRNSEPVTDGVNITEFYMKQDYSYQRFTYLSFIPNPGD
MYSCHVEHEGLQEPATVFWEPEVPEEQSDPETVICVLGIILGIISAVVGVILLIKERQRL
QAQQHGI
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgagtgttacattactgtattaatgctggttttaattcaaggaaccttggct
gtgaaatatctacacgaaaacacccttgtctattttgttcaggagcgcagtcccaataaa
cactttgatctgttggtggacggagatgaggttttctacatggacttcaacctgaagaag
gaggtggcccggatccccgagtttgacggtcattacatagagggaggagaggcggggatc
tcagccaatatcgccaacctgaaactcagttttaatgtttggaagaacctgtcccatggg
accccggaaccgaaagttgccccccagattgccatgtatcctgaagagcctgttgaatgg
gggcagcccaacacattgatctgtctggctgatagattctaccctccacacatcagcatg
acatggttgaggaacagtgagccagtgactgacggagtcaacattacggagttctatatg
aaacaggattattcctaccagagattcacatacctgagcttcatcccgaatcctggagac
atgtattcctgtcatgtggaacatgaggggctgcaggaaccagcgactgtattctgggaa
cctgaagtgcccgaggaacagtctgatcctgagacagtgatctgtgttctgggaattatc
ctgggaattatcagtgctgttgtaggggtcatcttactgatcaaagagagacagcggctg
caagctcagcaacacggcatctag
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