KEGG   Rhincodon typus (whale shark): 109926034
Entry
109926034         CDS       T06055                                 
Symbol
aff4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X1
  KO
K15185  AF4/FMR2 family member 4
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109926034 (aff4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtp03021]
    109926034 (aff4)
Transcription machinery [BR:rtp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     109926034 (aff4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 109926034
NCBI-ProteinID: XP_020381524
LinkDB
Position
12:complement(51636741..51733927)
AA seq 1203 aa
MASQTGNMNREDRNVLRMKERERRNQGIQQNEDTFTGSSPLFAEPYKVQGRTEDKLSSRI
QSMLGNYDEMKDFIGDKSLQRLIGIPKGTVPSTTDEKPDQAFFGDQRHSTSHQSSKWTPV
GPATSAPSTSSQSQKRSSSGLQSSHGSSQRLSGGSSNTSSSSSQRHDRDSYSSRKRSGQH
GSEHSKSHSVSPAKPPAVSSSLSSSHSRSQGSDHHNKERHRSKSPRDLDATWDSPSRVHT
FPTSGQHSSQSFTPALMSKPNSMLQKPTAYVRPMDGQDQAPNESLEPKIPPEHYGNQSHS
SLAEMKSGNKVHLSKLKIPSQQVESSVSGDASCVDEILKEMTHSWPPPLTAIHTPCKAEP
SKFPFPTKESQHVNYSVPGQKRYNAASKSTSSHHQAKCSETDQLASRMLEDDLKLSSSED
SDADQDLGKPSSRGNLDGSSELSQQNSEGVEPPRADSSSHSGSESSSGSDSESESSSSDS
EANEPSCISPEPEPPPSSKWQLDNWLNKVNSHKVSPASSVDSHIQSSQSHSYKKENRDQS
ITYEDPGGSKDGNTTTPGRDSRNAQKGSESRSRQKSPAQSDGSAQRKTVGKKQPKKAERP
AVTEEQRGGLKVESEPTSDRATPIPANRHKAATKGSRKPSTKRESKSSTRVTIEKRKHKS
ASKTPQKSREYVETDSSSSDSEQSETLPPASQTPKYPENSRTPVHKSSIDGEDSFFRQRL
FSPMEEKELLSPLSDVDDKYRNITSLIVRIDLSLLSRKPESPRKETEQTKVDKEISLDRH
MRDTPKQSTEKKSNKGKRKHKNDGENESCENKRPKAEERSSSNHKPSNSKDSLKPTAERE
KVPLPSPSASAAQKTPKTEHKHQSRRRAVNQNSTLKSNTGNTKQNSSSNNSSKSSSSSKH
KKADEKTSIRPKENKIQEKTPVSSLNPLQSSTPSGDGLKSRRPKLSFDDRLHSADHYLQE
AKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALERSSQEAKSPFPMYAETVELIKYTM
KLKNHMAPDATAADKKLAVLCLRCQSLLYMRLFKLKKDSALKYSKTLTEHLKNSYNSAQA
QSPGVGSKAAGTPSPVSPKLSPGNTGSYSSGSSTSSSSSSASVTIPQRIHQMAASYVQVT
SNFLYATEVWDQADQLGKENKDFFVELDKVMHPLVFSSSSMTDLVRYTRQGLHWLRLDAN
LLP
NT seq 3612 nt   +upstreamnt  +downstreamnt
atggcctcacagactggaaacatgaaccgtgaagatagaaatgtgctacgaatgaaagaa
cgtgaacgaagaaatcaaggaattcaacaaaatgaggacacattcactggaagttcccct
ctatttgctgagccgtataaagtacagggacggacggaagataaactttctagcagaatt
cagagcatgttgggaaattatgatgaaatgaaagacttcataggagataaatctcttcaa
aggctcataggcatacccaaggggacagttccatcaactacagatgagaaacctgaccaa
gctttctttggtgaccagcgacacagcacatctcaccaaagtagtaagtggactccagtg
ggtccagcaacttctgctcctagtacttcttcacagtcacaaaagaggtcaagttcaggg
ttgcaaagcagccatggcagtagccaaagacttagtggtggcagcagcaatactagcagt
agcagtagccagagacatgatcgtgattcatacagcagccgtaagagaagtggccagcac
ggatctgaacattcaaagtcccattcagtcagtccagctaaaccacctgcagtttcttct
tcattaagttctagtcattctagatctcaaggaagtgaccaccacaataaggagcggcat
cggtcaaagtctcctcgagacctggatgctacctgggactctccatctcgtgttcataca
tttcccaccagtggacagcattcttcacagtcattcactcctgcattgatgtccaaaccc
aattcaatgttacagaaacctactgcatatgtaaggcctatggatggacaggatcaagcc
cctaatgagtcattggaaccgaaaattcctccagagcattatgggaaccagtctcacagc
agtctggcagaaatgaagtctggcaacaaagtacatctttcaaaactaaaaattccatct
cagcaagtggagtcttctgtgtctggtgatgccagttgcgtggatgagattctgaaggaa
atgactcactcctggccaccacctctgacggcaattcatacaccgtgcaaggctgagcca
tcaaaatttccatttccgacgaaggaatctcagcatgttaactacagtgtaccagggcag
aagagatacaatgcagcatcaaaatcgacctccagccatcaccaagcaaaatgctctgaa
actgaccaacttgcttcaagaatgttggaagatgacctcaaacttagcagcagtgaagac
agcgatgctgaccaggatttggggaaaccatcatcaaggggtaatcttgatggcagttct
gaactttcccagcaaaacagtgagggtgtggaacctccaagggctgattccagtagccac
agcgggtctgaaagtagttctgggtcagactctgaaagtgagagtagctctagtgacagt
gaggcgaatgaaccatcatgtatatctcctgagccagaaccaccgccttcaagtaagtgg
caattagacaactggctgaataaagtaaattctcacaaagtctcaccagcttcgtctgtg
gacagtcacattcaatcatctcagagtcacagttataagaaagagaaccgagaccagagt
attacgtacgaggatccaggtggatccaaggatggaaacacaaccactcctggaagagac
tcgaggaatgcacagaaagggtccgaaagtagaagtcgccaaaagtcaccagcacaaagt
gatggcagtgcacagaggaagacagttggtaaaaaacagcccaagaaagcagagcggcca
gctgtaactgaggaacaaagaggaggactaaaagttgaaagtgagcctacttctgacaga
gcaactcctattcctgcaaatcgtcataaagctgctacaaagggttctagaaaacctagc
acaaagagagaatctaagtcttcaactagggtaactattgaaaaaagaaaacacaagagt
gccagtaaaacacctcagaaatcaagggagtatgttgaaacagactcgtcttcttcagat
tctgaacaaagcgaaactctccctcctgcttctcagactccaaagtatcctgagaatagt
aggactcctgtccataaatcctccattgatggggaagacagcttttttcggcaaaggctt
ttctctcctatggaagagaaggagctcctttcaccactgagtgatgttgatgacaaatac
cgcaatattacttcactcatagttagaattgacctaagtctgttatctaggaaacctgaa
tcacctcgtaaggaaacagagcaaactaaagtggataaggagatctctttggacaggcac
atgcgagacactccaaagcagtcgactgaaaaaaagtcaaataaaggcaaacgaaagcac
aagaatgatggggaaaatgaaagttgtgaaaacaaaaggcctaaagctgaagaaaggagt
agttccaatcacaagccttccaacagtaaagattctttaaaaccaactgctgaaagagaa
aaggtgcctctgccttctccatctgcaagtgctgcacaaaagacacccaagactgagcat
aagcatcagagtcgcaggagagctgtaaatcaaaactccaccttgaagagtaacactggt
aacacaaagcagaacagtagcagcaataatagcagcaaaagcagttcttcttccaaacac
aaaaaggcagatgagaaaacatcaatacgccctaaggaaaataaaatacaagagaaaacc
ccagttagctccttgaacccattacagtcatcaacaccatcaggagatggattaaagtca
agaaggcccaaactcagctttgatgatcggttgcattcagcagatcattacctacaggaa
gcaaaaaaacttaagcataatgcagatgctctgtcagacaggtttgaaaaggcagtatat
taccttgatgcagttgtgtccttcatcgagtgtggtaatgcattggaacgaagttctcaa
gaagctaaatcacctttccccatgtatgctgagactgtagaactaatcaaatacactatg
aagttaaagaatcatatggcacctgatgctactgcagctgataaaaaactagctgtcttg
tgtcttcgatgtcagtcacttttgtacatgagattgtttaaactgaagaaagacagtgca
ttaaaatactccaaaacattgactgaacatctcaagaattcatataacagtgctcaagct
caatcacctggcgtaggaagcaaagctgctggtacgccatcaccagtttctcctaagctc
tccccaggtaatactggaagctattcctctggaagtagtacgtcctccagtagttcttca
gcctcagtcacaattccacagagaatccaccagatggcagctagttatgttcaagtcaca
tccaatttcctgtatgccactgaagtgtgggaccaagctgaccagctgggtaaagaaaac
aaagatttttttgtggagttggataaagtgatgcatcctttggtattcagcagcagcagt
atgactgatcttgtgcgctacactcgtcagggtttacattggctccgactggatgctaac
ctgttaccatga

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