Rhincodon typus (whale shark): 109927180
Help
Entry
109927180 CDS
T06055
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109927180
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109927180
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109927180
Ion channels [BR:
rtp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
109927180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
YVC1_C
Motif
Other DBs
NCBI-GeneID:
109927180
NCBI-ProteinID:
XP_020382703
LinkDB
All DBs
Position
14:complement(22838754..22921115)
Genome browser
AA seq
991 aa
AA seq
DB search
MAQLYYKKVNYSPYIDRIPLQIVRAENELSLEEKAYLNAVEKGDYATVKQALEEAAIYFN
ININCTDPLGRSALLIAIENENLEIMELLLSFSIYVGDALLYAIRKEVVGAVELLLHYRK
PSGEKQVPPLLMDAQFSEFTPDITPIMLAAHTNNYEIIKLLVHGGVSIPRPHQVRCNCVE
CVSSSEVDSLRHSRSRLNIYRALASPSLIALSSEDPILTAFQLGWELKELSKVENEFKAE
YEELSQQCKLFAKDLLDQARSSRELEIILNHRDDQSDELVPQKCHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRRHWAVKLLTCITIGFLFPILSVVYLVAPKSRLGLFI
RNPFIKFICHTGSYLTFLFLLLLASQHIVKTDLHMQGPPPTIVEWMILPWVLGFIWAEIK
EMWDGGFTEYVHDWWNLMDFAMNSLYLATITLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETSASEEPNHCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEYI
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGATLPPP
FNIIPSPKSVWYLCKWLHLHICQSRDSENEQKRENLREFTERHADDLIQNQHYQEVIKNL
VKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKSSRRTYSTSSDGMQI
GDLEEDSAEEMKKIVSFNLAGESNDRKKLKMNSFSVSALIKSVSGIDLNEEKSKNNRLSK
PSSSVRNGNRFQRYPSSKKDSFKRLGLLFSKMNGQLSEPSPEPVSSISDGLLQAQNMWQD
FNYSEISSPNNTTKSESSLNAVGLNEVNRRNRIDSHCSANFESFNCSSNISTSNNKLIDS
SSDVYDSWGEACDLLMTRWNSHQEDYVTTQL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgtactacaaaaaggtcaactattctccatacatagaccggattccattg
cagattgtacgtgcagagaatgagctctcactggaggagaaagcttatctgaatgcggtg
gaaaagggggactatgccactgtgaagcaagctctggaggaagctgcaatctactttaat
attaatatcaattgcacagatcctctgggacggagtgcactccttatagcaatcgaaaat
gaaaacttagagatcatggagctgcttctgagtttcagcatctatgtgggggatgcgttg
ctgtatgcaatacgaaaagaggttgttggagcagttgagcttctgctgcattatagaaaa
ccaagtggagaaaaacaggtccctcctttactgatggatgcccagttttcggaattcact
ccagatattacgcccataatgcttgctgcacataccaataactacgagattattaaactg
ttggtacatggaggagtctccattcctcgacctcaccaagtccggtgcaactgtgtggag
tgtgtttctagttcagaagttgacagtctccgtcactcaaggtcacgcctgaatatatac
cgtgctcttgccagcccttcgttaatagccttgtcaagtgaagatccgatcctcacagct
tttcagctagggtgggaactgaaagaactcagcaaagtggagaatgagtttaaagctgaa
tatgaagagctgtcacagcagtgcaaactctttgccaaagatctgttggatcaagctcga
agttccagagagctggagatcatattgaaccacagagatgaccagagtgatgagttagtt
ccccagaaatgccatgacctagcaaaactgaaggtagccatcaagtaccatcagaaagag
tttgttgctcagcctaactgccagcagttactcgcgacgttgtggtatgatggattccca
ggctggcgccgccgacactgggcagtcaaacttctaacctgcattacaattggctttcta
tttccgatactttctgtggtttatctggtggcgccaaagagcagactggggctgttcatc
aggaaccctttcattaagtttatctgccacacaggctcctacctgacattccttttcctg
ttgttgttggcatctcagcacattgtcaagacagaccttcacatgcaagggccaccacca
actattgtcgagtggatgatattaccatgggtattaggctttatatgggctgaaatcaaa
gaaatgtgggatggtgggtttaccgaatatgtacacgactggtggaacctgatggacttt
gcaatgaattccttgtacttggccactatcacactgaagattgttgcctatgtgaagtac
aatggctcacgccctcgtgaagaatgggagatgtggcacccaacgttgattgcagaagct
ctgtttgcaatagccaatatcttcagctcccttcgtctgatctcgcttttcactgcaaac
tctcacctgggaccactacaaatttcactgggccgcatgctccttgatattctcaagttc
ctcttcatttattgcttggtgttgcttgcatttgcaaatggattgaatcagctgtacttt
tactatgagaccagcgcttctgaagagcccaatcattgcaagggaatacggtgtgaaaag
caaaacaatgcattttcaacattatttgagacactacaatccttattctggtcagtattt
ggtctgttgaatttgtacgtcactaatgtgaaagctcggcatgagttcacagaatatatt
ggagccaccatgtttggaacctacaatgtcatctccttggttgtcttgctcaacatgctg
attgccatgatgaataactcgtaccagctgattgcagaccatgctgacattgaatggaaa
tttgccagaacaaagctttggatgagttattttgatgaaggtgcaactcttccaccacct
ttcaacatcatccccagtccaaagtctgtctggtacctctgtaaatggctgcacttgcat
atctgtcaaagcagagattcagagaatgagcaaaagcgtgagaatctcagagaatttaca
gaacgtcatgcagatgacttgatccaaaaccaacactaccaggaggttattaaaaattta
gtgaaaagatatgttgcagctatgatcagaagtgccaaaactgatgaaggacttacagaa
gagaactttaaggaactgaaacaggatatctccagttttcgctatgaggttcttgacctg
ttaggaaacagaaaatcatctcgaaggacatactctaccagcagcgatggaatgcaaata
ggagatttggaggaagatagtgctgaagaaatgaaaaaaattgtatcattcaatttggca
ggtgaaagcaatgacagaaagaagctgaaaatgaactcttttagtgtttcagctctaatc
aaatcagtttctggaatcgaccttaatgaagagaaatccaaaaataacagactgagtaaa
ccatcatcttcagtcagaaatggcaatcgatttcagagatatccaagttcaaagaaggat
tcatttaaaagacttggccttttgtttagcaaaatgaatgggcaactttctgaaccaagt
ccagagccagtgtcaagcatttctgatggactacttcaagcacaaaatatgtggcaggac
ttcaattattccgaaatttccagtcctaacaatacaacaaagagtgagagcagtcttaat
gctgttggtcttaatgaagtaaacagaaggaacagaattgatagccattgttcagctaac
tttgaatcctttaattgttcttccaatatcagtacctccaataacaaactcattgactca
tcaagtgatgtctatgactcctggggggaagcctgtgacttgctaatgaccaggtggaac
agtcatcaagaggactatgtaacaactcaattataa
DBGET
integrated database retrieval system
